Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2606 ATGGCTCTGGGAAGAGGCAGTGCAATGGTGCTACTACTTTGTTTCTTGGTGCTTCACTCTGAGATGGCTCGTGCTGCCACCTACACAGTTGGAGATAGTGGAGGTTGGACCTTTAACACTGTTGGGTGGCCCAAAGGAAAGCGCTTTAGGGCCGGTGACACACTTGTGTTCAATTATAGCCCTGGGGCTCACAATGTGGTGGTGGTGAACAAGGCTGGGTATGATAGCTGCAAGACTCCGAGAGGAGCCAAAGTGTATCGGTCAGGAAAGGACCAGATCAGACTTGCTAGGGGACAGAACTACTTCATCTGCAATTATGTGGGTCACTGCGAGTCTGGGATGAAAATTGCCATCAATGCTGCATAa 366 0.5027 MALGRGSAMVLLLCFLVLHSEMARAATYTVGDSGGWTFNTVGWPKGKRFRAGDTLVFNYSPGAHNVVVVNKAGYDSCKTPRGAKVYRSGKDQIRLARGQNYFICNYVGHCESGMKIAINAA 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2606 121 PANTHER BASIC BLUE-LIKE PROTEIN 4 119 - -
Ssu5g2606 121 CDD Plantacyanin 26 120 IPR041844 -
Ssu5g2606 121 Gene3D - 26 120 IPR008972 -
Ssu5g2606 121 SUPERFAMILY Cupredoxins 26 120 IPR008972 -
Ssu5g2606 121 PANTHER BLUE COPPER PROTEIN 4 119 IPR039391 GO:0009055
Ssu5g2606 121 Pfam Plastocyanin-like domain 36 114 IPR003245 GO:0009055
Ssu5g2606 121 ProSiteProfiles Phytocyanin domain profile. 26 121 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2606 Ssu-Chr5 70721647 70722571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2606 25 119 Miscellaneous Gene Families AT3G60270 44.898 4.74e-23 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2606 - - gmx:100499869 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2606 5 70721647 70722571 Ssu5g2606 5 70721647 70722571 ECH
Ssu1g0048 1 1960648 1961210 Ssu5g2606 5 70721647 70722571 PCT