Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2597 ATGAGTTTTCCACCCATCAAGTTGACCTCTCTTGAACAACTTGAACTTTCATTGTGCTCAAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGAAAATATAACACAGCTTGAGTTGAAGTATACTCCTATAAAAGAATTCCCATTTTCATTTAGAAATCTTACTGGACTTCGAGCTTTAGTGCTGGTTGGCTGTGGAAATGTTCAGTTACCAAGTAGCATTGTCATGTTGCCAGAACTGGCTGAGATTTTCGCTCTAGAATGCAAAGGGTGGCTATTGCCAAAACAAGATGAGGATGAAGAAAAAGTGAGCTCAATTTCTTCAACTGTAAAATGTCTCTGTCTCTGGGGCTGCAATCAATCAGATGATTATTTTCCCATGGCTTTAGCCTGGTTTGGTAATGTAAAAGAGTTAGAGCTATCAAGCAATAACTTTTCATTTCTTCCTGAATGCATCAAAGATTTTAGCTCTTTAACATTACTCAATTTGGATAATTGTGAGCGTCTTCGAGAAATTAGAGGAATTCCACcaaatttagaatatttctCTGGGGGAAATTGCAAGTCCTTGAGTTTCTGGTGTATAGCCATGTTATTGAATCAGGAACTGCATGAAGCTGGAAATACCATGTTTTGTTTGCCTGGAGCAAGGATTCCAGATTGGTTTGAGCACCAAAGCATAGGACCGTCAATATCTTTCTGGTTTCATAACAAGTTCCCTGCCATGGctctttgttttgttattgggccaATGGGTGAGGACTCTATTTTGTTTAGACCCATCATGACCATCAATGGCAACACAGTGGAGATACAGTTCTTAACtgaaaaaaggttttgtttCGACTTCCCAGTATTAGATGATCATATACTTATCATTGGTACAAAATACATGAATTTCGGAGATAATCTGGATAAAGCAGTTTCAAAAACTGAATGGAATCATGTGGCGGTTTCCATTGGTATTGATTTTGAACCAACCCCTAAGGAAATGATTGTCAAGCGAACTGGACTCCACATAATCAAACCAAAAAGTAGCATGGACAATATCCAATTCACTGATCCTTATAACCAACCATCCTTGAAAGAGAAGCATAGATTGCTGGATATAGGAGATTGTCATAAACAAATGATACAGCAGCAAAGTATGGTTTCATTGGAACCACATGTGGGACAGGGCAGAGAGTCACTTTCATCGCTTCCACCTCAAGCATGCAAAAATAACGTGAATTGGGATTCAGATTCAACAGGAATAAGTAGCACCACCGATGTCCAAGGCTGTGAAATTGCATCACGAAATTTACGGTTGGACATGGGAGTTTTGCAATTTGTGCAGCAGCGAAAGAGATTGGCTATTTTGGGTTTATTGCAACAACGGCGCATGGCTTCATTGGGTTTACTGCAACGACGGGACAAAGACCAGCTTTCATTGCTTTCTCCTCCATCACTGGAGTTAATGAATGAGAATGTGAGTTGGGATTCAAAGTTGATGGTATCATGGCAGAGGAGTAGCATCACCAGCGTCCAAGGTTTGCGAGAGCAACATTGGCCTTCCACCATGAAACAAAACTTTGAAGTTCATAAAGACGCAAATGAAGCCAAAGGGAAGGAAATGGTAGAGTGCAACAGTAATAATGGAAATGACAATGGCAGAATCCCATTAATGGAGCAGCTACCCATGACAAAGGAGGATCATGTGCTTAGCAAGAAATACCAACCTGCCTCGAGTATGGCTTGGGATCCAATGGAATTGGCATATCTTGTATATATCCAGAAGACCAAACGACAAAAATTCTGTAAGTGA 1806 0.3909 MSFPPIKLTSLEQLELSLCSSLENFPEILGKMENITQLELKYTPIKEFPFSFRNLTGLRALVLVGCGNVQLPSSIVMLPELAEIFALECKGWLLPKQDEDEEKVSSISSTVKCLCLWGCNQSDDYFPMALAWFGNVKELELSSNNFSFLPECIKDFSSLTLLNLDNCERLREIRGIPPNLEYFSGGNCKSLSFWCIAMLLNQELHEAGNTMFCLPGARIPDWFEHQSIGPSISFWFHNKFPAMALCFVIGPMGEDSILFRPIMTINGNTVEIQFLTEKRFCFDFPVLDDHILIIGTKYMNFGDNLDKAVSKTEWNHVAVSIGIDFEPTPKEMIVKRTGLHIIKPKSSMDNIQFTDPYNQPSLKEKHRLLDIGDCHKQMIQQQSMVSLEPHVGQGRESLSSLPPQACKNNVNWDSDSTGISSTTDVQGCEIASRNLRLDMGVLQFVQQRKRLAILGLLQQRRMASLGLLQRRDKDQLSLLSPPSLELMNENVSWDSKLMVSWQRSSITSVQGLREQHWPSTMKQNFEVHKDANEAKGKEMVECNSNNGNDNGRIPLMEQLPMTKEDHVLSKKYQPASSMAWDPMELAYLVYIQKTKRQKFCK 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2597 601 Pfam C-JID domain 214 289 IPR045344 -
Ssu5g2597 601 PANTHER NB-ARC DOMAIN PROTEIN 14 269 - -
Ssu5g2597 601 SUPERFAMILY L domain-like 3 404 - -
Ssu5g2597 601 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 269 IPR044974 GO:0006952
Ssu5g2597 601 Gene3D Ribonuclease Inhibitor 2 209 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2597 Ssu-Chr5 70601209 70607359 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2597 6 187 WRKY Transcription Factor Family AT4G12020 29.891 3.90e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2597 - - var:108344624 863.218