Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2590 ATGCCAAATGGTAGCCTTGAAGACCATCTCTTTCCAACCAAATTGGACAACGAAAATACAAAGAAATCCCTGACTTGGCCTCAAAGAAAAAGCATAATCTTAGATGTGGCAAATGCTTTGGTTTATTTGCACTTCGGAGTTAAACCTGCAGTTTATCACAGAGATATCAAAGCCACCAATATACTACTTGATGCAGATATGAGGGCAAGGGTTGGAGATTTTGGGCTAGCCAGACAAAGCAGTGAAAGCAGGTCTCACCTAAATACTAGAGTAGCTGGAACTCGTGGATATCTAGCACCTGAATATGCACTTTATGGTCAGCTAACTGAGAAGAGTGATGTCTATAGCTTTGGTGTGGTTGTTCTTGAGATAATGTGTGGAAGGAAAGCCCTTGAGTTGTCTTCAACAGGAACACCGGTTTTCTTGATCACAGATTGGGTTTGGTCATTGATGAAATCTGGAAACATAGGAGAGGCTTTGGATGCTTCTATGTTAGGAGATGGAAATTCTGCAAGAAACATAATGGAGAGGTTTTTGCTGGTTGGACTTCTTTCTTCTCACGTAATGGTTGCTTCACGGCCAACAATTTTGAATGCTTTGAAGATGTTAGAAGGGGATATTGAGGTCCCACCAATTCCAGATAGGCCAGTGACTCATGGGCACTATGTGTTGTACAGTGGTGGTGATTGCTCTGGGATGAGCTCCGGATGTGGGTTTGTAAGCTCATGA 729 0.4266 MPNGSLEDHLFPTKLDNENTKKSLTWPQRKSIILDVANALVYLHFGVKPAVYHRDIKATNILLDADMRARVGDFGLARQSSESRSHLNTRVAGTRGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALELSSTGTPVFLITDWVWSLMKSGNIGEALDASMLGDGNSARNIMERFLLVGLLSSHVMVASRPTILNALKMLEGDIEVPPIPDRPVTHGHYVLYSGGDCSGMSSGCGFVSS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2590 242 ProSitePatterns Serine/Threonine protein kinases active-site signature. 51 63 IPR008271 GO:0004672|GO:0006468
Ssu5g2590 242 ProSiteProfiles Protein kinase domain profile. 1 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2590 242 PANTHER OS01G0253100 PROTEIN 1 232 IPR045271 GO:0004714|GO:0006468
Ssu5g2590 242 SUPERFAMILY Protein kinase-like (PK-like) 1 204 IPR011009 -
Ssu5g2590 242 SMART serkin_6 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2590 242 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 1 232 - -
Ssu5g2590 242 Gene3D Transferase(Phosphotransferase) domain 1 1 209 - -
Ssu5g2590 242 Pfam Protein kinase domain 4 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2590 Ssu-Chr5 70484570 70485298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2590 1 221 Receptor kinase-like Gene Family AT1G11050 72.124 1.99e-111 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu5g2590 Pkinase 2.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2590 - - gmx:100788367 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2590 5 70484570 70485298 Ssu5g2590 5 70484570 70485298 ECH
Ssu1g0085 1 2967956 2970566 Ssu5g2590 5 70484570 70485298 PCT