Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2584 ATGGATTGTCATGGTGGTTATTGCCAAATCTCTCCAAACAAGGAGCATGAAGGCCTTAAGGAACCAATTTTCTTACATGGTGACCTGGATCTGTTGATAATAGAAGCTAAGTCTCTTCCAAATTTAGATTTATCTAGTGAAGCAGTTAGAAAATGTATCACTATGGGCAGCATGTGCCATCCTCCGTTTATAAAAGGACTAAAGACACACTCTGGAAAAGATAAGATGATAACTAGTGACCCTTATGTTTCCGTATGCATAGCTGGGGCTACCATAGCTCGGACTAGAGTGATTCCTAACTGTGAGAACCCTTTGTGGGATGAGCAATTTGTTGTGCCTGTCGCTCACCCTGCTCAAAAAGTGGAGTTCCTTGTGAAGGACAATGATATTCTTGGGGCTGAACTCATTGGAGTGGTGGAGATACCTGTTCAAAAGATACTTTCAGGAAATGTTATTAATGATTGGTTTCCCATCATTGGTCAGTATGGAAACTGCTTAAAACCTTATCCTGAGTTGCATATTTCGGTTCAGTATAGGGCAATTGGAATGCACCCTTCAGAAAGTATCAGTAATGGGGATGGAACAGGTTGTTTAGGAGTTCCTAAAACATATTTCCCTCTCAGGAAAGGAGGGAGTGTGACTCTATATCAAGATGCACATTTACCAGATGATATGCTACCTGAAATTCCACTTGAGGGTGGAAAAGTGTTTCAGCACAGTAAATGTTGGGAGGATATATGCCATGCAATTTTGGAAGCTCATCACCTGATATATATTATAGGATGGTCAGTTTACCACCCTGTGAGGCTTGTGAGAGAGCCAACAAAACCATTACCTTCTGGGGGAGAGCTTTCACTTGGAGAGCTGTTGAAGTACAAGTCACAAGAAGGGCTCCGAGTGGTTATGCTGATCTGGGATGACAGAACTTCACACGACAAGTTTCTTTTGAAAACAGTTGTGGGAACCCTCTTTACGCATCACCAGAAATGTGTGCTTGTAGACAGTCAAGCTTCTGGGAATAATCGGAAAATAACAGCTTTTATTGGTGGTTTGGATCTATGTGATGGTAGATATGATACACCTGAGCATCGGCTTTTTCGTGATCTAGATACAGTCTTTCATAATGATTTTCATAATCCTACATTTCAATTAAATTCGAATTCGTATGCACCAAGGCAGCCATGGCATGACTTACATTGCAAAATTGAAGGTCCAGCAGCATATGATATATTGACCAATTTCGAACAAAGATGGAAGAAGGCCAAAAAATGGCGTGACTTCAGGCTCAAAAAGGTGACAAATTGGCATGATGATGCTTTGCTAAGGCTAGACCGTATTTCATGGATTGTCAAACCTTCTCCTTCTTCCGAAGGTGAAAAAGCTGTTCATGTAACTGATGAAAATGATCCTGAGAGTTGGCACGTGCAGGTATTTAGGTCCATAGATTCTGGATCTGTGAAGGGATTTCCAAAGGATTTTGACAAAGCTAAGGCTCAGaaTCTTTTATGTGggaaaaatttgaaagtagATCAAAGCATCCATACTGCTTATGTAAAAGCAATAAGATCGGCTGAgcactttatatatattgagaatcAGTATTTTTTGGGCTCCTCCTATCACTGGccttcatataaaaataaagcagGTGCAAATCACTTGGTTCCCATGGAGTTGGCTTTGAAAATTGCCAGTAAGATCAGTGCAAATGAACGTTTTTCTGTATATATAGTTATACCAATGTGGCCAGAGGGTGTTCCAACAAGTGCTGCTGTTCAAGAAATCTTGTTCTGGCAGGGACAGACAATGTCTATGATGTACAAGATTGTAGCCAATGCAATTAAAAAAGCAGGTCTCTCCGATCAGTATCATCCACAAGATTATCTCAATTTTTACTGTCTTGGAAAGAGAGAACCTCAATACACAAATATTCCATCAACGCCAAATCCATCTGAAAACCGCGCTTTGGTATCAGTTAAGAAATTCAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGACGAATACGTAATTGTTGGATCAGCAAATATTAACCAGAGATCATTAGATGGTTCAAGGGACACGGAAATAGCTATGGGTGCTTATCAACCAAAATATACGTGGACGCAAAAGAATTCTCATCCACATGGCCAGGTGTATGGATACAGAATGTCACTGTGGGCTGAGCACCTTGGCAGTCTTGATCATACTTTTGCTGAACCTCACAGCCTGGAATGTGTTAGAGATGTCAACAAAATTGCCAAACAAAACTGGGACACATATGTGTCTGAGGAAGGGAATCAGATGAGGGGACACTTAATGCTGTATCCAGTTAAGATCAGCAGGGATGGAAAAGTCAGTGCACTGGATGATCATGAGTCCTTTCCTGATGTTGGTGGCAAAATTCTTGGATCACCAAATTCACTTCCGGATGCACTAACCACCTGA 2460 0.4004 MDCHGGYCQISPNKEHEGLKEPIFLHGDLDLLIIEAKSLPNLDLSSEAVRKCITMGSMCHPPFIKGLKTHSGKDKMITSDPYVSVCIAGATIARTRVIPNCENPLWDEQFVVPVAHPAQKVEFLVKDNDILGAELIGVVEIPVQKILSGNVINDWFPIIGQYGNCLKPYPELHISVQYRAIGMHPSESISNGDGTGCLGVPKTYFPLRKGGSVTLYQDAHLPDDMLPEIPLEGGKVFQHSKCWEDICHAILEAHHLIYIIGWSVYHPVRLVREPTKPLPSGGELSLGELLKYKSQEGLRVVMLIWDDRTSHDKFLLKTVVGTLFTHHQKCVLVDSQASGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFHNDFHNPTFQLNSNSYAPRQPWHDLHCKIEGPAAYDILTNFEQRWKKAKKWRDFRLKKVTNWHDDALLRLDRISWIVKPSPSSEGEKAVHVTDENDPESWHVQVFRSIDSGSVKGFPKDFDKAKAQNLLCGKNLKVDQSIHTAYVKAIRSAEHFIYIENQYFLGSSYHWPSYKNKAGANHLVPMELALKIASKISANERFSVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIVANAIKKAGLSDQYHPQDYLNFYCLGKREPQYTNIPSTPNPSENRALVSVKKFRRFMIYVHAKGMIVDDEYVIVGSANINQRSLDGSRDTEIAMGAYQPKYTWTQKNSHPHGQVYGYRMSLWAEHLGSLDHTFAEPHSLECVRDVNKIAKQNWDTYVSEEGNQMRGHLMLYPVKISRDGKVSALDDHESFPDVGGKILGSPNSLPDALTT 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2584 819 Gene3D Endonuclease Chain A 234 440 - -
Ssu5g2584 819 PANTHER PHOSPHOLIPASE D 318 819 - -
Ssu5g2584 819 PANTHER PHOSPHOLIPASE D 23 318 - -
Ssu5g2584 819 Gene3D Endonuclease Chain A 461 718 - -
Ssu5g2584 819 SMART pld_4 665 692 IPR001736 GO:0003824
Ssu5g2584 819 SMART pld_4 322 357 IPR001736 GO:0003824
Ssu5g2584 819 PANTHER PHOSPHOLIPASE D 318 819 IPR015679 -
Ssu5g2584 819 PANTHER PHOSPHOLIPASE D 23 318 IPR015679 -
Ssu5g2584 819 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 25 179 IPR035892 -
Ssu5g2584 819 Pfam Phospholipase D Active site motif 323 357 IPR001736 GO:0003824
Ssu5g2584 819 ProSiteProfiles C2 domain profile. 11 156 IPR000008 -
Ssu5g2584 819 CDD C2_plant_PLD 22 179 - -
Ssu5g2584 819 Pfam Phospholipase D C terminal 739 809 IPR024632 -
Ssu5g2584 819 SMART C2_3c 28 155 IPR000008 -
Ssu5g2584 819 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 665 692 IPR001736 GO:0003824
Ssu5g2584 819 PIRSF PLD_plant 14 319 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Ssu5g2584 819 PIRSF PLD_plant 313 819 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Ssu5g2584 819 Pfam C2 domain 27 158 IPR000008 -
Ssu5g2584 819 Gene3D C2 domain 23 179 IPR035892 -
Ssu5g2584 819 Pfam PLD-like domain 654 701 IPR025202 -
Ssu5g2584 819 SUPERFAMILY Phospholipase D/nuclease 511 749 - -
Ssu5g2584 819 SUPERFAMILY Phospholipase D/nuclease 201 426 - -
Ssu5g2584 819 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 322 357 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2584 Ssu-Chr5 70353029 70368484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2584 24 818 Phospholipase D Gene Family (Wang group) AT4G11850 52.544 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2584 K01115 - gmx:100779740 1547.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2584 5 70353029 70368484 Ssu5g2584 5 70353029 70368484 ECH