Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2583 atggaggaaaaaaaaatgcaattaatcgAAAACATTTTTTGTACTTTCAATTTCTATATCCAATGTATTCGTTGTTATTCCTGCGTGCTGCTGATCCGTGTGCCGATAAATAAAAGAGTTGTTCGGCCCGGTCAACGAAACAAACAGGGAGTGTGCGGCAGAGGAGTGTCTCGTTTATGGAGGATCAAAGCGGAGAAGGTGAAggagaagaacaagaacaagaacaacCTTCACTCtcctattatatttattctccccattcaatttattaacaacaacaacaataataataataataataataattttattcaccaATTATTGTTAATCATAATGGGTAAGGGCCCCTTCTCCTTCCGCCGCTCGGCCTCTCGCCGCCGACCCAAGAAGGCCGCAGCCCCGCCTCCTTCTCCGCCGCAGCCTCCCTTTGTGGCAGGAATCGCCGCCTGCCCGGAGGACGACGCCAACAACCGTTCAATCGCCGCCAACCCCGGCAACGCCCTGACGAAGGCGAAGAAGAAGACCGGCGGCACCAGATTGTGGATGAGGTTTGACCGGTCGGGCCGGTCAGAACTCGTGGAGTGGGAGAAAAACGCCATCATCCGCCACGCCGCGATTCCCGCCAGGGACTTGAGGATTTTGGGCCCCGTCTTCTCCCACTCCTCCAACATCCTCGCTAGAGAGAAAGCGATGGTGGTTAATTTGGAGTTTATAAAGGCTATAGTGACTGCTGAGGAAGTGTTATTGCTTGATCCTCTTCGCCAGGAGGTTCTTCCGTTTGTTGAGCAACTCAGGCAACAGCTTCCGAGTAAAAGTCAGCCTAAACTTCTCGGGGCCACGGAGGAACAGGAAGGTGAAATGCAGGTTTCTAATGGCAGGCTGTGGTTGCCAGTGCCGGAGTCGGCCGAAGGTTTGCAGTCCGAGCTTCCGTTTGAGTTTCAGGTGCTGGAGATTGCTTTGGAGGCCGTGTGTACGTATCTGGACTCGAGCGTGGCAGACCTTGAGAGAGGTGCTTACCCTGTGTTAGACGAATTGGCTAGGAATGTTAGCACCAAGAATCTTGAGCATGTGAGAAGTTTGAAGAGTAATCTCACGCGGTTGCTGGCGCGAGTGCAGAAGGTGCGAGATGAAATTGAACATCTGTTAGATGACAACGAAGATATGGCACAACTATATTTGACAAGGAAGTGGTTGCAGAATCAACAATTTGAGGCTCATTTGGGTGCCACCCCCTCAAATAGCCTTCCTAATACCGCACATGCTGTTCGTCGACTTGGCTCTTGCAGAAGTGAAAGTCTTGTGACCAGCCATTATGGGGATGATAATGACGTCGAGGACTTGGAGATGTTGCTTGACGCATATTTCATGCAGTTGGATGGAACCCGTAACAAGATATTATCCGTTAGGGAGTATATTGACGACACTGAAGACTATGTCAACATCCAACTTGATAACCACCGAAATGAACTTATTCAGCTGCAGTTGACGTTGACTATTGCATCATTTGCCATTGCTGTTGAAACCTTGATTGCTGGTACATTTGGTATGAACATTCcttgtaaattatataatatagaagGAATATTTTGGCCCTTCGTTTGGATCACGTCTGCAGCTTGCGTATTGCTTTTCTTGCTTATTTTAGCATATGCAAGGTGGAAAAAATTGCTGGGATCATAA 1680 0.45 MEEKKMQLIENIFCTFNFYIQCIRCYSCVLLIRVPINKRVVRPGQRNKQGVCGRGVSRLWRIKAEKVKEKNKNKNNLHSPIIFILPIQFINNNNNNNNNNNNFIHQLLLIIMGKGPFSFRRSASRRRPKKAAAPPPSPPQPPFVAGIAACPEDDANNRSIAANPGNALTKAKKKTGGTRLWMRFDRSGRSELVEWEKNAIIRHAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVLPFVEQLRQQLPSKSQPKLLGATEEQEGEMQVSNGRLWLPVPESAEGLQSELPFEFQVLEIALEAVCTYLDSSVADLERGAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAQLYLTRKWLQNQQFEAHLGATPSNSLPNTAHAVRRLGSCRSESLVTSHYGDDNDVEDLEMLLDAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNHRNELIQLQLTLTIASFAIAVETLIAGTFGMNIPCKLYNIEGIFWPFVWITSAACVLLFLLILAYARWKKLLGS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2583 559 Coils Coil 357 391 - -
Ssu5g2583 559 Gene3D - 167 252 - -
Ssu5g2583 559 Pfam CorA-like Mg2+ transporter protein 439 552 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Ssu5g2583 559 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 495 547 IPR045863 -
Ssu5g2583 559 Gene3D Magnesium transport protein CorA, transmembrane region 253 490 - -
Ssu5g2583 559 CDD Mrs2_Mfm1p-like 181 556 IPR039204 -
Ssu5g2583 559 Gene3D Magnesium transport protein CorA, transmembrane region 497 557 - -
Ssu5g2583 559 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 116 559 IPR039204 -
Ssu5g2583 559 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 116 559 - -
Ssu5g2583 559 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2583 Ssu-Chr5 70339865 70343061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2583 112 559 MRS2 Gene Family AT3G58970 66.593 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2583 K16075 - gmx:100812561 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2583 5 70339865 70343061 Ssu9g1768 9 54990276 54993538 PCT