Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2580 ATGGAGATTCACTACAGTAGCAGCTACTTCGAGAGGCGCCCCATCCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTTAAAGAATGGGTTCCCCAAGATCTTGTAACAACGGGAGGGAAGTGCATGCTCTTAAAATGGGTAACAGAGGATACCTTGAAGACCttgaaagaaaaggcaaaagagCCATCAATACCTGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATATGTTTGTCACTACGAGGGATGTGGAAAGAAATTTCTGGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCATACTGGAGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCTCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATCTGCCCATACCCGGATTGTGGAAAGAGATATGCTCACGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGAATGCATCCGTGGATATGACAAAGTACACTCCACCTTCGGAGAAGCAAACAAAAACTGCTAAACCTTCTGGAGGGGCATATGGTTCTGCATCATCTGATCGCCCCTATGCATGTCCCTATGATGGGTGCGAAAAGGCATACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCACCCAGGGCTTATGCCTGATGAAAATGCAGAGCATGCTCAGGCTAATGCTGACAATGAAATGGACGAAGCAAGTGACCAAGATGCCTATGTTGGGAAACGGTCAAATGGTAAAATTCAGAAGCAGAGTAAGCCTAAACCAAACCTCAAGTTGCCTCCTTCCAAAATTGCGAAACGCAAAGTGTCCACTCCCACTTTAActgtaaataaaaattcttgGCCCGTGAAAGATGAACCTTACGATGAAGAAGATAGCGAAGAAACAGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCAGGAGGAaacaatgaagatgatgatgaagaaaCAGAATATGAAGACTGA 1113 0.4178 MEIHYSSSYFERRPILKSKAPAVKWVKEWVPQDLVTTGGKCMLLKWVTEDTLKTLKEKAKEPSIPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNASVDMTKYTPPSEKQTKTAKPSGGAYGSASSDRPYACPYDGCEKAYIHEYKLRLHLKREHPGLMPDENAEHAQANADNEMDEASDQDAYVGKRSNGKIQKQSKPKPNLKLPPSKIAKRKVSTPTLTVNKNSWPVKDEPYDEEDSEETEEDRDNVEDGWRYAGGNNEDDDEETEYED 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2580 370 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Ssu5g2580 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
Ssu5g2580 370 Gene3D Classic Zinc Finger 77 102 - -
Ssu5g2580 370 Gene3D Classic Zinc Finger 134 161 - -
Ssu5g2580 370 MobiDBLite consensus disorder prediction 266 370 - -
Ssu5g2580 370 Coils Coil 260 280 - -
Ssu5g2580 370 MobiDBLite consensus disorder prediction 192 226 - -
Ssu5g2580 370 SMART c2h2final6 136 160 IPR013087 -
Ssu5g2580 370 SMART c2h2final6 77 101 IPR013087 -
Ssu5g2580 370 SMART c2h2final6 166 190 IPR013087 -
Ssu5g2580 370 SMART c2h2final6 229 254 IPR013087 -
Ssu5g2580 370 SMART c2h2final6 106 130 IPR013087 -
Ssu5g2580 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Ssu5g2580 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Ssu5g2580 370 Gene3D Classic Zinc Finger 163 195 - -
Ssu5g2580 370 Gene3D Classic Zinc Finger 103 133 - -
Ssu5g2580 370 PANTHER BNAA03G13270D PROTEIN 4 369 - -
Ssu5g2580 370 MobiDBLite consensus disorder prediction 199 219 - -
Ssu5g2580 370 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Ssu5g2580 370 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Ssu5g2580 370 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Ssu5g2580 370 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Ssu5g2580 370 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 369 - -
Ssu5g2580 370 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Ssu5g2580 370 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Ssu5g2580 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Ssu5g2580 370 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Ssu5g2580 370 MobiDBLite consensus disorder prediction 332 346 - -
Ssu5g2580 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Ssu5g2580 370 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Ssu5g2580 370 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Ssu5g2580 370 Gene3D Classic Zinc Finger 203 273 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2580 10 355 C2H2 Transcription Factor Family AT4G06634 65.479 2.50e-145 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu5g2580 zf-C2H2 0.0088 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2580 - - gmx:100811480 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2580 5 70199306 70204527 Ssu5g2580 5 70199306 70204527 ECH