Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2576 ATGGAAAGCATTGCCGCGCAGCTGAAGCGCGGCATCTCGCGGCAGTTCTCGTCGGGGTCGCTGCGGAAGAACCTGAGCCGGCAGTTCACGCGGCAGGTATCGCTGGATCCGCGGCGGAACAACCAGCGGTTCAGCTTCGGGCGGCAGTCGTCGCTGGATCCGATTCGGCGGAGCCCAGGGCAGGACCACGCGGAGCTCACCGTCCCCGAGAACCTCGATTCCACCATGCAGCTGCTCTTCATGGCGTGCCGCGGCGACGTCAAGGGAGTCGAGGATTTGCTCAACGAAGGCATTGACGTCAACAGCATCGACCTCGACGGACGCACCGCCCTCCACGTCGCCGCTTGCGAGGGCCACGTCGAAGTCGCCAGGCTCTTGCTCACACGCAAGGCCAACATCGACGCTCGCGATCGCTGGGGCAGCACCGCGGCGGCTGATGCCAAATATTATGGGAATACGGAAATTTATTACATGTTGAAGGCTCGTGGGGCGAAAGTGCCGAAAACCAAGAAGACTCCAATGACTGTTGCGAATCCTCGTGAAGTTCCGGAATATGAACTCAACCCGTCAGAGCTACAGGTTCGGAAGAGTGATGGTATTTCAAAGGGAACATACCAAGTAGCTAAATGGAATGGCACAAAGGTTGCAGTGAAAATACTTGACAAGGACAGTCATTCAGATCCTGATACCATAAATGCTTTCAAACATGAGCTCACATTATTAGAAAGGGTGCGACATCCGAATGTGGTCCAGTTTGTTGGAGCTGTCACCCAAAATATACCTATGATGATTGTGCGTGAGCACCATGCTAAGGGTGACCTGGCAAGCTATCTTCAAAAGAAAGGGCGTTTGTCCCCATCAAAAGTTCTACGGTTTGCTCTTGATATTGCTAGGGGCATGAACTATCTTCATGAATGCAAACCAGATCCGATTATTCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGGCAATTGAAGGTAGCTGGATTTGGCACTGTGGGATTTTCACTAATCTCACCTGATGAAGCAAAGCTGGTACTGCCTGTGTCTAACGTTGATCTTTCAAGCTTGTACGTGGCACCAGAGATTTACAAAGATGAAGTATTTGATAGAAGTGTGGATGCATATTCTTTTGGTCTTATTATATATGAGATGATAGAGGGTATGCAGCCCTTCCATCCCAAGTCCCCGGAGGAGGCAGTGAAACTGATGTGCTTAGAAAGGAAAAGACCATCATTcaagatcaaaacaaaaaattacccTCCGGATTTGAAAGAGTTGATTGAGGAATGTTGGGATCCAGCACCTGTTGTCAGGCCAACATTTTCTCAGGTCATTGTACGGTTGGACAAAATTGTTGCAAATTGCTCAAAACAAGGATGGTGGAAAGATACTTTTAAACTTCCTTGGTATGTTTCCTAG 1434 0.4868 MESIAAQLKRGISRQFSSGSLRKNLSRQFTRQVSLDPRRNNQRFSFGRQSSLDPIRRSPGQDHAELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHVAACEGHVEVARLLLTRKANIDARDRWGSTAAADAKYYGNTEIYYMLKARGAKVPKTKKTPMTVANPREVPEYELNPSELQVRKSDGISKGTYQVAKWNGTKVAVKILDKDSHSDPDTINAFKHELTLLERVRHPNVVQFVGAVTQNIPMMIVREHHAKGDLASYLQKKGRLSPSKVLRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGTVGFSLISPDEAKLVLPVSNVDLSSLYVAPEIYKDEVFDRSVDAYSFGLIIYEMIEGMQPFHPKSPEEAVKLMCLERKRPSFKIKTKNYPPDLKELIEECWDPAPVVRPTFSQVIVRLDKIVANCSKQGWWKDTFKLPWYVS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2576 477 SMART ANK_2a 74 102 IPR002110 GO:0005515
Ssu5g2576 477 SMART ANK_2a 106 135 IPR002110 GO:0005515
Ssu5g2576 477 CDD STKc_MAP3K-like 200 453 - -
Ssu5g2576 477 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 33 473 - -
Ssu5g2576 477 SUPERFAMILY Ankyrin repeat 75 176 IPR036770 -
Ssu5g2576 477 MobiDBLite consensus disorder prediction 40 63 - -
Ssu5g2576 477 MobiDBLite consensus disorder prediction 40 56 - -
Ssu5g2576 477 Gene3D - 38 185 IPR036770 -
Ssu5g2576 477 Pfam Protein tyrosine and serine/threonine kinase 200 452 IPR001245 GO:0004672|GO:0006468
Ssu5g2576 477 ProSiteProfiles Ankyrin repeat profile. 106 138 IPR002110 GO:0005515
Ssu5g2576 477 ProSiteProfiles Protein kinase domain profile. 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2576 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Ssu5g2576 477 PIRSF ILK 8 474 - -
Ssu5g2576 477 Gene3D Phosphorylase Kinase; domain 1 187 269 - -
Ssu5g2576 477 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 473 - -
Ssu5g2576 477 Gene3D Transferase(Phosphotransferase) domain 1 270 469 - -
Ssu5g2576 477 Pfam Ankyrin repeats (many copies) 93 143 IPR002110 GO:0005515
Ssu5g2576 477 SUPERFAMILY Protein kinase-like (PK-like) 205 453 IPR011009 -
Ssu5g2576 477 ProSiteProfiles Ankyrin repeat region circular profile. 106 138 - -
Ssu5g2576 477 SMART serkin_6 194 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2576 Ssu-Chr5 70126841 70131948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2576 1 474 MAP Kinase Kinase Kinase AT2G31800 77.474 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Ssu5g2576 PK_Tyr_Ser-Thr 8.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2576 - - gmx:100810411 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2576 5 70126841 70131948 Ssu5g2576 5 70126841 70131948 ECH