Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2567 ATGGGTAATTGCTGGTGTAGGTGGGAGTCATCAGAGTATAGGGTCTCGTCCAATGTAAAGTCAGCACAAAACCAGGGAACCAAACAAAGGAACGATGATAGTAAGTTACCATCGAATCCTGAAGAAGTAGAAGACCTACGCCGTGACTCAGCTGCAAATCCTTTGATTGCATTCACTTATGATGAGCTAAAGGTAATCACTGTAAATTTTAGGCCAGACCGTGTGTTGGGGGGAGGAGGATTTGGAAGCGTGTATAAGGGGTTCATTTCTGAGGAGTTAAGGCAGGGGCTTCCTACCCTTGCAGTAGCTGTTAAGGTTCATGATGGTGACAACAGTCATCAAGGGCACAGAGAATGGCTGGCAGAAGTCATATTTTTGGGGCAGCTTTCACATCCAAATCTAGTCAAGTTAATTGGATACTGCTGCGAAGACGAACATAGGGTACTAATATATGAGTACATGTCCCGGGGAAGTGTGGAACACAACTTGTTCTCAAAAATTTTGCTTCCCATGCCATGGTCCATAAGAATGAAGATTGCATTTGGCGCTGCAAAGGGACTTGCATTTCTTCATGAAGCAGAGAAACCTGTCATCTATCGTGACTTTAAgacatcaaatattttattggaCCAGGACTACAATGCAAAACTTTCTGACTTTGGCCTCGCTAAGGATGGACCAATTGGTGACAAATCCCATGTCTCTACTCGAATAATGGGAACATATGGTTATGCTGCACCTGAATACATAATGACAGGTCATCTGACTCCTAGAAGTGATGTTTACAgttttggtgttgtttttcTTGAACTTCTCACTGGAAGAAAATCTTTAGACAAGTTAAGACCTGCTAGAGAGCAGAACCTAGCAGAATGGGCTCTTCCTTTActgaaggaaaagaagaaatttctAAACATCATAGATCCAAGGCTGGATGGTGATTATCCAATTAAAGCAGTTCACAAGGCTGCAATGCTCGCATATCATTGCTTGAACCGCAACCCAAAAGCAAGGCCTCTAATGCGGGATATTGTAGACTCATTGGAGCCTTTGCAGGCACCCACAGAGGTTCCTATTGGAAAAACATTAACCATAATCAGTGAGGTTCCTGAATctggtttgaaaatgaaagatgCAAAATGA 1143 0.4033 MGNCWCRWESSEYRVSSNVKSAQNQGTKQRNDDSKLPSNPEEVEDLRRDSAANPLIAFTYDELKVITVNFRPDRVLGGGGFGSVYKGFISEELRQGLPTLAVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEYMSRGSVEHNLFSKILLPMPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDQDYNAKLSDFGLAKDGPIGDKSHVSTRIMGTYGYAAPEYIMTGHLTPRSDVYSFGVVFLELLTGRKSLDKLRPAREQNLAEWALPLLKEKKKFLNIIDPRLDGDYPIKAVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQAPTEVPIGKTLTIISEVPESGLKMKDAK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2567 380 PANTHER OS01G0588500 PROTEIN-RELATED 10 361 - -
Ssu5g2567 380 Gene3D Transferase(Phosphotransferase) domain 1 154 360 - -
Ssu5g2567 380 ProSiteProfiles Protein kinase domain profile. 70 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2567 380 MobiDBLite consensus disorder prediction 17 33 - -
Ssu5g2567 380 MobiDBLite consensus disorder prediction 17 46 - -
Ssu5g2567 380 SUPERFAMILY Protein kinase-like (PK-like) 46 348 IPR011009 -
Ssu5g2567 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Ssu5g2567 380 CDD STKc_IRAK 76 351 - -
Ssu5g2567 380 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL16-RELATED 10 361 - -
Ssu5g2567 380 Gene3D Phosphorylase Kinase; domain 1 32 153 - -
Ssu5g2567 380 ProSitePatterns Protein kinases ATP-binding region signature. 76 105 IPR017441 GO:0005524
Ssu5g2567 380 Pfam Protein tyrosine and serine/threonine kinase 73 348 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2567 Ssu-Chr5 69938515 69945534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2567 3 348 Glycoside Hydrolase AT3G07070 46.348 2.25e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu5g2567 PK_Tyr_Ser-Thr 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2567 - - gmx:100775722 742.265