Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2562 ATGGCACTTTGTATGCAGAGAGATTCTTCAGCATCGAACAAGCACATGGATTGTGGCAAGTATGTGAGGTACACACCTGAACAGGTGGAGGCTTTGGAGAGGGTGTACGCGGAGTGTCCAAAGCCTGGTTCTTCCAGAAGGCAACAAATCATTAGGGACTGCCCCATCCTTGCTAACATTGAACCAAAGCAAATCAAAGTTTGGTTCCAGAATCGCAGATGTCGCGAAAAGCAGCGAAAGGAAGCCTCTCGTCTGCAGACAGTGAATAGAAAGCTGTCTGCAATGAACAAGTTgttaatggaagaaaatgacCGTCTGCAGAAGCAGGTCTCACACTTGGTTTATGAAAATGGATACATGAAACAACAAATACATACTGCATCTGCTACTACTACTGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGCACCaacaacaaaacccaaaaactcAGCATCCCCAGTGGGATGCCAACAACCCAGCTGGTCTTCTCGCAATTGCTCAGGAGACCCTGGCGGAGTTCCTTTCCAAAGCTACTGGAACTGCTGTCAACTGGGTCCAAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCCCAACTGTAGTGGGGTAGCGGCAAGAGCCTGTGGCCTTGTGAGCCTAGAGCCCACAAAGGTTGCTGAGATTCTTAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATATATTGAGCATAGTCCCCACAGGGAATGGGGGCACAATAGAGCTCATGTACATGCAGACGTATGCACCAACAACATTGGCAGCTGCAAGAGACTTCTGGACTCTAAGATACACTACAAGTTTGGAAGATGGAAGTCTTGTGATTTGTGAGAGATCCTTGACTTCTTCAACTGTTGGCCCCACAGGGCCTCCTGCTTCAAACTTTGTAAGAGCTGAAATGCTTCCCAGTGGATATCTTATTAGATCCTGTGAGGGTGGTGGATCCATTATTCACATTGTTGATCATGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTACTAAGGCCCCTCTATGAATCATCAAAATTCTTGGCTCAGAAATTGACTACTGCTGCCTTGCGACATGTAAGACAAATTGCACAAGAATCAAGTGGAGAAGTTCATTATGGTGGGGGTCGTCAGCCTGCTGTCTTGAGGACATTTAGTCAAAGACTTTGCAGAGGGTTCAATGATGCTGTCAACGGGTTTGTGGATGATGGTTGGTCTCTGATGGGTAATGATGGTGTGGAAGATGTGACCATTGCTGTAAACTCATCTCCCAACAAGTTTTTTGGTTCCCATTACAATACATCCATGCTTCCAGCATTTGGAGGTGGGGTTCTGTGTGCCAAGGCATCAATGCTGCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCAGTTTTTGAGAGAGCATCGTTCAGAGTGGGCAGATTATGGGGTTGATGCTTATGCTGCTGCATGCCTTAAAGCTAGTCCTTATGCAGTTCCTTGTGCAAGACCCAGTGGATTCCCCAGCAGCCAGGTCATTTTACCACTTGCTCATACGATTGAGCATGAAGAgTTCTTGGAGGTAGTTCGTATTGAGGGTCATGCATTTCCCCCTGATGATGTAGCTTTGGCATGTGATATGTATCTACTGCAGCTGTGCAGtggagttgatgaaaatgcaatTGGAGCATGTGCACAGCTTGTGTTTGCACCTATTGATGAAGCATTTGCAGATGATGCTCTCTTGCTGCCTTCTGGTTTCCGTATCATACCATTGGATCCTAAAACAGATGGTCCGGCTTCAACTAAGACACTGGACTTAGCATCAACACTGGAAATAGGATCTGGTAATGCCCGTCCAGCTGGTGAAAGTGTTTTGAATAACTACAACGTTAGGTCGGTCCTTACAATTGCATTCCAGTTTACCTTTGAGAACCATTTGCGGGACAATGTGGCTGTTATGGCTCGCCAATATGTGCGTAATGTTGTGCGATCTGTTCAGAGGGTTGCCATGGCAATTGCTCCCTCTCGGCTCAGTACCCAGTTGGGGCCAAAGTCACTTCCTGGTGCACCAGAGGCTCTTACCTTAGCACGATGGATCTGCAGAAGCTACAGGCTTCACACCTGCACAGAGCTTTTTAGAGTTGAGTCCACATCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATTCAGATGCAATATTGTGCTGTTCTATAAAAACAAATGCATCTCCAGTGTTCACCTTTGCAAACCAAGCTGGACTAGACATGCTCGAAACCACTCTTGTTGCTCTTCAAGACATAATGCTGGATAAAGTTCTTGATGAAGCTGGCAGGAAGGTTCTCTGCATTGAGTTCTCCAAAATAATGCAACAGGGGTTTGCATATCTGCCAGCAGGAATATGTGTATCCAGTATGAATCGACCAGTGTCCTATGAGCAGGCCATTGCGTGGAAAGttcttgatgatgatgattccAATCACTGCTTGGCCTTGGTGTTCATGAACTGGTCTTTTGTCTGA 2544 0.4501 MALCMQRDSSASNKHMDCGKYVRYTPEQVEALERVYAECPKPGSSRRQQIIRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTASATTTDNSCESVVMSGQHQQQNPKTQHPQWDANNPAGLLAIAQETLAEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSPNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLNILSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTVGPTGPPASNFVRAEMLPSGYLIRSCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKFLAQKLTTAALRHVRQIAQESSGEVHYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMGNDGVEDVTIAVNSSPNKFFGSHYNTSMLPAFGGGVLCAKASMLLQNVPPALLVQFLREHRSEWADYGVDAYAAACLKASPYAVPCARPSGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFPPDDVALACDMYLLQLCSGVDENAIGACAQLVFAPIDEAFADDALLLPSGFRIIPLDPKTDGPASTKTLDLASTLEIGSGNARPAGESVLNNYNVRSVLTIAFQFTFENHLRDNVAVMARQYVRNVVRSVQRVAMAIAPSRLSTQLGPKSLPGAPEALTLARWICRSYRLHTCTELFRVESTSGDAILKQLWHHSDAILCCSIKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDEAGRKVLCIEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVLDDDDSNHCLALVFMNWSFV 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2562 847 SUPERFAMILY Homeodomain-like 19 82 IPR009057 -
Ssu5g2562 847 SUPERFAMILY Bet v1-like 168 379 - -
Ssu5g2562 847 Gene3D - 198 379 IPR023393 -
Ssu5g2562 847 CDD START_ArGLABRA2_like 162 378 - -
Ssu5g2562 847 SMART HOX_1 17 83 IPR001356 GO:0003677
Ssu5g2562 847 CDD homeodomain 20 80 IPR001356 GO:0003677
Ssu5g2562 847 Pfam MEKHLA domain 702 846 IPR013978 -
Ssu5g2562 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 847 IPR044830 GO:0003700
Ssu5g2562 847 Coils Coil 85 109 - -
Ssu5g2562 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 847 - -
Ssu5g2562 847 Pfam Homeodomain 21 78 IPR001356 GO:0003677
Ssu5g2562 847 Gene3D - 10 86 - -
Ssu5g2562 847 SMART START_1 167 377 IPR002913 GO:0008289
Ssu5g2562 847 ProSiteProfiles 'Homeobox' domain profile. 23 79 IPR001356 GO:0003677
Ssu5g2562 847 CDD bZIP 72 111 - -
Ssu5g2562 847 Pfam START domain 168 376 IPR002913 GO:0008289
Ssu5g2562 847 ProSiteProfiles START domain profile. 158 386 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2562 Ssu-Chr5 69849212 69855144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2562 1 847 Homeobox Transcription Factor Family AT2G34710 77.283 0.0 1359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu5g2562 START 1.1e-50 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2562 K09338 - gmx:100807637 1602.03