Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2559 ATGAATAATACACGGTTGGAATTTGGGAGGCCGGTCTCAGGTAAAAGAAGATTGAAGGATTTATTGCTTCAAAAAGATAATTGCTTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGagtttttgtatgtttaaaatgcTGTGGTGTGCACAGAAGTCTTGGTTCTCATATATCAAAGGTTTTGTCTGTGACATTGGATGAATGGGCAAATGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATATTCCGGAAGGATATACAAAACCTGGACCAGATGCTAGTCATGAGCAGCGTGCAAAATTCATACGGTTAAAGTATGAGCATCAAGAATTTTTGAAACCTGGTTTGCGCATTGTGTCAGATAAAAGCAATCTCCAATCAAGTATTTCCAAAGGGATTATGGATAGTTTTCGAAGTACTAGTGGTTCACAACATAcgGAAGGAATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTGATCAAAGGCACGGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGATTATTGAATTTGAATGTATTTGATTATGACTTGTTTTCAGCTGATGATATAATGGGGGAAGCAGATATTGATCTTCAGCCCCTGATTACATCTGCAATGGCATTTGGAGATGCTAGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCCATGACAATGCACTCATAGATGATAGCACAGTCAATATTATTGATGGTAAGGTTATACAAGAGATGTCAATCAAGCTCCAGAACGTAGAATCTGGAGAATTGGACTTGGAACTCGAGTGGTTACCTCTTGATCATTAG 987 0.3678 MNNTRLEFGRPVSGKRRLKDLLLQKDNCFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGSHISKVLSVTLDEWANDEIDAMIEVGGNSSANSIYEAYIPEGYTKPGPDASHEQRAKFIRLKYEHQEFLKPGLRIVSDKSNLQSSISKGIMDSFRSTSGSQHTEGMVEFIGMLKVKVIKGTDLAIRDMMTSDPYVILKLGQQTVQTTVIKSNLNPVWNEELMLSVPQQFGLLNLNVFDYDLFSADDIMGEADIDLQPLITSAMAFGDARMFDDMQIGKWLKSHDNALIDDSTVNIIDGKVIQEMSIKLQNVESGELDLELEWLPLDH 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2559 328 Gene3D Arf GTPase activating protein 10 134 IPR038508 -
Ssu5g2559 328 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Ssu5g2559 328 Gene3D C2 domain 170 328 IPR035892 -
Ssu5g2559 328 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Ssu5g2559 328 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Ssu5g2559 328 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Ssu5g2559 328 SUPERFAMILY ArfGap/RecO-like zinc finger 15 131 IPR037278 -
Ssu5g2559 328 Pfam C2 domain 173 262 IPR000008 -
Ssu5g2559 328 ProSiteProfiles C2 domain profile. 154 269 IPR000008 -
Ssu5g2559 328 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 168 266 IPR035892 -
Ssu5g2559 328 SMART arf_gap_3 15 137 IPR001164 GO:0005096
Ssu5g2559 328 SMART C2_3c 173 268 IPR000008 -
Ssu5g2559 328 CDD ArfGap 18 124 - -
Ssu5g2559 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 8 328 IPR044518 GO:0005096|GO:0005543
Ssu5g2559 328 CDD C2_ArfGAP 171 315 - -
Ssu5g2559 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 8 328 - -
Ssu5g2559 328 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2559 Ssu-Chr5 69757724 69763804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2559 1 328 C2H2 Transcription Factor Family AT4G21160 72.700 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2559 K12486 - gmx:100777084 570.852