Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2557 ATGCTAGTGACTTCTAATTCTCAGCAGCAGAAGCCTCTACCACAAATTTCTGAAAGTATTAAGTATCTAAATCTAAGCCACAACCGGCTTACTGGATCATTGGTTAGTGGAGGTGAGCAACCAGGTTTTGAATACTTGAAGGTGTTAGACCTCAGTTACAATCAATTATCTGGAGAATTGCctgaatttgattttgtttatgaACTCCTGGTCCTTAAGCTCAGCAACAACAGATTTTCAGGATTTGTTCCCTCTGGTCTTCTGAAAGGAGACTCTTTGGTTTTAACTGAACTGGATTTGAGTGGCAACAATCTTTCAGGGCCAGTAAGTATAATTACATCAACAACACTGCACTTTCTTAATCTCTCATCAAATGGGTTCAGTGGTGAGCTGCCATTGCTGACTGGAAGCTGTGCCGTACTTGATTTGTCAAATAACAAATTAGAAGGAAATTTAACCAGGATGATGAAATGGGGGAATATTGAATTTCTTGATCTCAGTAGGAATCACTTAACAGGACCCATCCCTGAGGTAACTCCTCAGTTTTTACGATTAAATTATCTGAATCTTTCCCATAACTTTCTTAGTAGATCCCTCCCAAGAGTCTTAACACAGTATCCAAAGCTTAAAATGCTTGACCTTAGTTCCAACCAGTTAGATGGAATATTTCTAGTTGATCTGCTCGCAGTGCCCACTTTGCAAGAGCTCCATCTTGAAAATAATATGATCTCTGGTGGCATTAATTTATCATCCTTCCCTCTTCGTCCTTCTGATCTTCAGATTCTTGAACTTTCTTATAACCATTTTAATGGTTCTTTTCCTGCGGAATTTGGGTCATTAACAGGCCTGAAAGTGCTCAATATTGCCGGAAATCTTTTTTCTGGTTCTCTTCCAACTACAATTGCTAACATGAGTTCCCTAGATTCCTTGGATATATCAGAAAATCATTTTACAGGCCCTTTACCAATTAACATGCCAAAGggagtaaaaaaattcaatgcttcaaacaatgatCTGTCTGGAGTTGTCCCAGAAAACCTTAGGAAGTTCCCTAGTTCTTCTTTCTATCCTGGGAATGATTGGTTGCATTTTCCAAATGGTCATTCTGGATCAACCAATAAACCAGATGAAAATTCCAATAGGAAGCATATCAGCTCTGTTGTTAAAGTGATAATCATAGTGTCATGTGTGGTTGCTGTTCTCTTCATGTTAATCCTAGTTGTTGTCCTCATACACCACATCCGAATATCAAGATCTCTGTCAGAATATGCTACTACTAAGGATATGAGTGAGCATGCTCAACCACACACCACTGGCGCTGGTCGTGCAAAAGACTTGGGTGGTGCTTTGGTTGTATCTGCTGAGGATCTTGCAACCTCACAGAAAGGATCATCATCAGAGATAATCAGTCCTGATGAAAAAAGGACAGCTGTAACTGGGTTCTCCCCATCAAAAAATAGCCACTTTTCATCACCAGGTTCTAGTGATTCAGTTTCTGTAGGAAATCATGCAAGACTATATGCAATATCAGCAGATAAATTGATAGGAGAGCTGTATTTTCTTGACGATGCAATAACATTGACACCTGAGGAGCTGTCTAGAGCCCCAGCTGAAGTTTTGGGGAGAAGCAGTCATGGCACATCTTACAAGGCAACTCTGGAGAATGGTTTATTATTGAGAGTGAAGTGGCTAAGAGAAGGACTGGCAAAACAGAGAAAAGAGTTTGCCAAAGAGGCTAAAAAATTTGCAAACATCAGGCATCCCAATGTTGTGGGATTGAGAGGGTACTACTGGGGTCCTACACAGCATGAGAAGCTTATTCTTTCAGATTACATCTCTCCGGGAAGTCTTGCAAGTTTTCTATACGaTCGACCAGGACGAGCAGGTCCACCATTGACTTGGGACCTGAGGCTAAAAATAGCAGTTGATGTAGCACGTGGGCTGAACTATCTCCACTTTGACCGTGCTGTTCCTCACGGGAACCTCAAAGCAACAAATGTATTGTTAGATACATGTGACTTGAATGCACGTGTAGCTGATTACTGCCTTCACAAGCTTATGACTCAGGCTGGTACATCTGAACAAATTCTTGCTGCTGGGGTCTTGGGTTATCGTGCACCAGAGCTTGCTGCTTCCAAGAAGCCAATGCCCTCCTTCAAATCAGATGTTTATGCTTTTGGCGTTATACTTTTGGAACTTTTAACCGGAAGGTGTGCTGGTGATGTTATATCTGGTGAGAAGGAAGGTGTTGATCTGACAAATTGGGTAATGTTGCGTGTTGCACAAGGTAGAGGCTCAGAATGTTTTGATGCTGCATTGGTGCAAGAAATGGGCAATTCAGTTGTTGAAAAGGGATGA 2358 0.4059 MLVTSNSQQQKPLPQISESIKYLNLSHNRLTGSLVSGGEQPGFEYLKVLDLSYNQLSGELPEFDFVYELLVLKLSNNRFSGFVPSGLLKGDSLVLTELDLSGNNLSGPVSIITSTTLHFLNLSSNGFSGELPLLTGSCAVLDLSNNKLEGNLTRMMKWGNIEFLDLSRNHLTGPIPEVTPQFLRLNYLNLSHNFLSRSLPRVLTQYPKLKMLDLSSNQLDGIFLVDLLAVPTLQELHLENNMISGGINLSSFPLRPSDLQILELSYNHFNGSFPAEFGSLTGLKVLNIAGNLFSGSLPTTIANMSSLDSLDISENHFTGPLPINMPKGVKKFNASNNDLSGVVPENLRKFPSSSFYPGNDWLHFPNGHSGSTNKPDENSNRKHISSVVKVIIIVSCVVAVLFMLILVVVLIHHIRISRSLSEYATTKDMSEHAQPHTTGAGRAKDLGGALVVSAEDLATSQKGSSSEIISPDEKRTAVTGFSPSKNSHFSSPGSSDSVSVGNHARLYAISADKLIGELYFLDDAITLTPEELSRAPAEVLGRSSHGTSYKATLENGLLLRVKWLREGLAKQRKEFAKEAKKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRAGPPLTWDLRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDTCDLNARVADYCLHKLMTQAGTSEQILAAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVISGEKEGVDLTNWVMLRVAQGRGSECFDAALVQEMGNSVVEKG 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2557 785 Pfam Leucine Rich repeat 45 59 IPR001611 GO:0005515
Ssu5g2557 785 Pfam Leucine Rich repeat 95 107 IPR001611 GO:0005515
Ssu5g2557 785 SUPERFAMILY Protein kinase-like (PK-like) 537 745 IPR011009 -
Ssu5g2557 785 Pfam Leucine rich repeat 259 317 IPR001611 GO:0005515
Ssu5g2557 785 Pfam Leucine rich repeat 164 219 IPR001611 GO:0005515
Ssu5g2557 785 PANTHER - 1 784 - -
Ssu5g2557 785 Pfam Protein tyrosine and serine/threonine kinase 538 736 IPR001245 GO:0004672|GO:0006468
Ssu5g2557 785 Gene3D Transferase(Phosphotransferase) domain 1 524 777 - -
Ssu5g2557 785 Gene3D Ribonuclease Inhibitor 2 369 IPR032675 -
Ssu5g2557 785 ProSiteProfiles Protein kinase domain profile. 534 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2557 785 PANTHER OS07G0626500 PROTEIN 1 784 - -
Ssu5g2557 785 PRINTS Leucine-rich repeat signature 46 59 - -
Ssu5g2557 785 PRINTS Leucine-rich repeat signature 206 219 - -
Ssu5g2557 785 SUPERFAMILY L domain-like 15 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2557 Ssu-Chr5 69748960 69752031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2557 18 764 Receptor kinase-like Gene Family AT4G36180 29.785 5.07e-70 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu5g2557 PK_Tyr_Ser-Thr 2.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2557 - - gmx:100777862 1319.29