Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2549 ATGTCTGGGGTTGAGCTTGCGGGCCCTCTTGTTGCAGAGGTGGGAGCAGTTGCGGTTGGAGAATTACATACTACAATTGCATCTAAATTTGCATCTTCCAAAAACCTGGATGACAACTACAAAAAATTGGTCAAAGATATGGAGAAGCTACTTGCAATAAAGAAGGATAAAGAGACGGAAGTTCAAAGAAACAGCCACAAAGATACCACTAATGCTTACAAACTGTGGACAAACAGGGTATCAGATGCTGCAGAAGAAGTGCAGAAGctcaaaaataaatacgaaCAAAAATTGCTACCCTGGTGGCGCATTCAACGACGTTCAAGTCTGAGTGAAGAGATGGAGAAGAAGTGCAACTGTGTTCGTGAACTTATGAAAGATGAATGTTTAACAGATTTTCTAGTTGATAAACCACCAGAGCCTGTCTTAAAGGAGTTAAATGTTCCACAGATAAGTGGATATCCAACCCTTCAAGGCGCCTTGGAAAATATTCTTGGTTtgctcaaaaataataagatcaaAGTCATTGGAGTGTGTGGAACAAAAGGGGTGGGGAAAACAACAATAATGCGGAACCTAAACAACAATGAAGAAGTTGCTAAACTCTTTGAAATTGTCATTTTTGTGAAAGTCACAGCTGATGATCATAAGCTTCAAGAGAAAATTGCTAGTCGGTTGATGCTGGACATAGGAATCAACAAGGAGCACAGTAATGTTGCAAGAAGAATAAAAGAAGAGCTGGAGAAGAAGaagtatttattgattttggatgAGGTCGAGGGTGTCATCAATTTGGAGCAATTGGGAATCCCAAGTGATAACAGTGGCAGTAAGGTGGTGATTGCCACTCAATTACCTCGATTTTGTAAGTTGAATAAGGTGCAAAGGGTCATCAAAGTTGCGGAGTTATCTCCTGAGGAAGCATGGAAGATGTTTAGGGATACTGTTCGTGACTTTAATCCTAAGATTGATTCCCTTGACATTCAACCTATCGCCAAACTGGTATGCAAGAGGTGCTCTCGACTTCCACTTCTCATTCATAAAATagcaaattcttttaaattgaaagaGTCTGCTCCTAGTTGGTGGGCGGGACTTGAAGATATGAAACCATGGCCAGAAATTCAAAATCAAGGTTTAGAAGAGTTGTACTCATGTCTGAAATTCTGTTATGATGAACTCAAAGATAAAAAGAAGCAGAAATGCTTTCTATACACTTCAATGTATCCTGCAGATAGCAAGGTTTACACTGATTATTTAGTGGAGTGTTGGGCAGCACAAGGTTTACTTGgtgatataaatgaaaaaaggtCATATCGAAGTGCACGCAATTGTGGTATTGACATATTGGAGCATCTTGCTAATGTCTCTTTACTAGAGAAAGGGGAACCGATGATATATGTCAGCATGAATGATTGTATGAGACAACTTGCATTACACATATCCTCTAAAGATCCTGAGTGTAGCTTTTATCTTGAAGATGGTGAAGAGTCTGAAAATCTCTCAAGTTCAAGAGCTTGGCAGCAGCCTAGGTGGGTCTCTATGGTTCGCAGAAAACTGTTTAATTTACCAACAAGCCAAGATTGCAGCATGATTTTGACATTGTTGCTGCGAAAAAATCCAAAGTTAACTACAATACCACATACTTTTTTTGAGAACATGAGCAATCTGCTTCTGTTAGACTTGTATGGTAGCAGGATTACACAACTGCCATCGTCCCTATCAAAACTGTCTGGTCTAAGGAGTTTATTCCTGAACAGTTGTGAGCTCTTGGTATCATTGTCATCTGAAATAGGATCACTTCAATTTCTAGAGGTCCTTGACATACGAGGTACCAAAGTAACTTTCATACCTCTTCAAATTGGATGTATGACTAATCTAAGATGCCTGCGAATCTCATTCATTGCAAGTGAGGAacaaaatgaagttaaaaatgCTCATGTGATTTCAAAGCTTCACAGGTTGGAAGAATTAACCATTCAAGTCATATCCTATAAACAATGGTGCAATGATGCTGAAAATGTCCTACAACATGTAGCTTCTTTGGAAATGTAA 2055 0.3752 MSGVELAGPLVAEVGAVAVGELHTTIASKFASSKNLDDNYKKLVKDMEKLLAIKKDKETEVQRNSHKDTTNAYKLWTNRVSDAAEEVQKLKNKYEQKLLPWWRIQRRSSLSEEMEKKCNCVRELMKDECLTDFLVDKPPEPVLKELNVPQISGYPTLQGALENILGLLKNNKIKVIGVCGTKGVGKTTIMRNLNNNEEVAKLFEIVIFVKVTADDHKLQEKIASRLMLDIGINKEHSNVARRIKEELEKKKYLLILDEVEGVINLEQLGIPSDNSGSKVVIATQLPRFCKLNKVQRVIKVAELSPEEAWKMFRDTVRDFNPKIDSLDIQPIAKLVCKRCSRLPLLIHKIANSFKLKESAPSWWAGLEDMKPWPEIQNQGLEELYSCLKFCYDELKDKKKQKCFLYTSMYPADSKVYTDYLVECWAAQGLLGDINEKRSYRSARNCGIDILEHLANVSLLEKGEPMIYVSMNDCMRQLALHISSKDPECSFYLEDGEESENLSSSRAWQQPRWVSMVRRKLFNLPTSQDCSMILTLLLRKNPKLTTIPHTFFENMSNLLLLDLYGSRITQLPSSLSKLSGLRSLFLNSCELLVSLSSEIGSLQFLEVLDIRGTKVTFIPLQIGCMTNLRCLRISFIASEEQNEVKNAHVISKLHRLEELTIQVISYKQWCNDAENVLQHVASLEM 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2549 684 Coils Coil 73 93 - -
Ssu5g2549 684 Pfam Leucine rich repeat 534 590 IPR001611 GO:0005515
Ssu5g2549 684 PANTHER DISEASE RESISTANCE PROTEIN RP 31 660 IPR044974 GO:0006952
Ssu5g2549 684 Pfam NB-ARC domain 161 393 IPR002182 GO:0043531
Ssu5g2549 684 Gene3D - 302 390 IPR042197 -
Ssu5g2549 684 PANTHER - 31 660 - -
Ssu5g2549 684 Gene3D Ribonuclease Inhibitor 501 679 IPR032675 -
Ssu5g2549 684 SUPERFAMILY L domain-like 507 669 - -
Ssu5g2549 684 Coils Coil 40 60 - -
Ssu5g2549 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 405 IPR027417 -
Ssu5g2549 684 Gene3D - 141 299 IPR027417 -
Ssu5g2549 684 Gene3D - 391 480 IPR036388 -
Ssu5g2549 684 PRINTS Disease resistance protein signature 339 353 - -
Ssu5g2549 684 PRINTS Disease resistance protein signature 575 591 - -
Ssu5g2549 684 PRINTS Disease resistance protein signature 175 190 - -
Ssu5g2549 684 PRINTS Disease resistance protein signature 246 260 - -
Ssu5g2549 684 CDD AAA 155 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2549 Ssu-Chr5 69600908 69602962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2549 173 565 WRKY Transcription Factor Family AT5G45050 20.384 8.23e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2549 - K13459 gmx:102661619 1125.92