Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2526 ATGATTTCGTGTGATATTTGTGGTGTTTTACGTCGTCCCTCACTTAACATTGGAACTTCCAACAGTAACAAAACAGTTGAAGAAATAAGCAAAAGTCCTGGAGCATCCAAGTTGGCCAGGtctctttttcaatcattaCCACAACAGATTCCCAAAGAGGCTGTATTATTTCCAAAGCCGGGTGATGGTTTTCTGACAGATGGCAGTAACTTCTCCAAGATTGAGAATGTCCAAGGAGAATTTCATGAAATTCATAAGGCTTTTAGTACTCAAATCCATCCACATTTAAACATAGATCCTTTCAAGTTTGATGTTCCATCCCCAGATGACGTGGTTTATACTGGCCTGCATTCTTCCAAAATGGGTTTGAAAGACAAAGTTACAAACTCTAAAAGTTCTCAGCTTTCATCAATCATCAGAGAGAAGAATGAACTTTCTGAACAAACAAATGCTGAAAGTTCAGACAACTTATCATCCTTAATGCGAAAGAGCAGACGGGATAGTTCAGCTGAGAGCAAGCTTTCCAAAAAGGTATCAATTGATCTGCAAACAAGCGGTAAAACTTCAAACAGCTTGCCAGAACCTTTGCCAAAAGACAAAGGTggcaatattaataaaataaattcttcaaaaaatgGTACAATTGATATTCAATCAAGCAAGGAAAAGTCAGGTAGTTTGTCTGCCCTGCCAACAGTCAAGGAAAGTGATAAGATTAGTTTATCTTCTATCAAAGATGGAAAACCTGAAAGTATTTCCTGCAGTTTCAACAACATGGTTCTCGATGTAAGATCTGGAAATTCAGATAATACTAATGCTAAGGGACCTCATTCACATGTTTCTTATAAGCCAGAAAAATGGATGTTCCCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACTCTATCTGGTAGGTTGCTACACCTATTGGGACGGATTTCCCAGAAAGAAATGCACAAATATGAAAAGGATGCCAAGTTACAGGGCAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGAGAACGGGGAATAACTATGACAGTGGCTGTTGCTTACTTTGACACCAAGAAATATCATGTTGTTGTGCTCGACTCCCCCGGCCATAAAGATTTTGTCCCAAACATGATTTCTGGGGCAACACAAGCTGATGCTGCAATTCTTGTGATAGATGCCTCACTTGGTTCATTTGAAACTGGTATGGATGGCAGCAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGCTTTGGTGTTGACCGGGTTATAGTTGCTGTAAATAAGATGGATGCTGTTGCGTACTCCAAAGATCGATTTGATTTTATAAGACAGCAGCTGGGAGTTTTTCTCCACTCATGTGGTTTCAAAGATTCTTCTATATTTTGGATTCCCATGAGTGCCatggaaaatcaaaatttggtGGCATCGCCTTCTGATGCTTGTTTCAAAAACTGGTATGGTGGACCTTATCTGTTAGATGCAATTGACTCTCTCAAACCTCCTACTAGAGAATTCTCAAAACCTCTACTAGTGCCAATATGTGATGTCATCAAATCAACTGTGCTTGGGCAGGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCAAAGgTCTTAGTTATGCCTTCAGCTGTTGTGGGAACAGTACGCTCATTGGAGCGTGACACTAGTGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTCGATGGGAGTCATGTGATGGCAGGAGGTGTACTATGCCATCCTGACTTTCCTGCTGCAGTTGCTAAGCATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGTAAGTCCCATATTGGTGGGCGCACAGTTAGAGTTTCATATACACCATGCGAAGGAACCTGCTAGAGTTTCAAGAATATTATCGGTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCGCCTCGCTGTCTCACTGCAAAACAAAGTGCAGTAATTGAGGTGATTTTGCATGAATCAGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCCCTGGGAAGAACAGTTGCTGTTGGAATTGTGACAAGAATAATTGAAGAACAAGGTTAA 2187 0.4042 MISCDICGVLRRPSLNIGTSNSNKTVEEISKSPGASKLARSLFQSLPQQIPKEAVLFPKPGDGFLTDGSNFSKIENVQGEFHEIHKAFSTQIHPHLNIDPFKFDVPSPDDVVYTGLHSSKMGLKDKVTNSKSSQLSSIIREKNELSEQTNAESSDNLSSLMRKSRRDSSAESKLSKKVSIDLQTSGKTSNSLPEPLPKDKGGNINKINSSKNGTIDIQSSKEKSGSLSALPTVKESDKISLSSIKDGKPESISCSFNNMVLDVRSGNSDNTNAKGPHSHVSYKPEKWMFPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKDAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASLGSFETGMDGSKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYSKDRFDFIRQQLGVFLHSCGFKDSSIFWIPMSAMENQNLVASPSDACFKNWYGGPYLLDAIDSLKPPTREFSKPLLVPICDVIKSTVLGQVSACGKLEAGALRSGSKVLVMPSAVVGTVRSLERDTSACTVARAGDNVAVTLQGVDGSHVMAGGVLCHPDFPAAVAKHLELKVLVLDGVSPILVGAQLEFHIHHAKEPARVSRILSVLDPKTGKVTKKSPRCLTAKQSAVIEVILHESVCVVEFSSCKALGRVSLRSLGRTVAVGIVTRIIEEQG 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2526 728 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 297 528 IPR000795 GO:0003924|GO:0005525
Ssu5g2526 728 CDD EF1_alpha 301 520 - -
Ssu5g2526 728 PRINTS GTP-binding elongation factor signature 360 368 IPR000795 GO:0003924|GO:0005525
Ssu5g2526 728 PRINTS GTP-binding elongation factor signature 441 450 IPR000795 GO:0003924|GO:0005525
Ssu5g2526 728 PRINTS GTP-binding elongation factor signature 380 390 IPR000795 GO:0003924|GO:0005525
Ssu5g2526 728 PRINTS GTP-binding elongation factor signature 301 314 IPR000795 GO:0003924|GO:0005525
Ssu5g2526 728 PRINTS GTP-binding elongation factor signature 396 407 IPR000795 GO:0003924|GO:0005525
Ssu5g2526 728 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 620 724 IPR009001 -
Ssu5g2526 728 PANTHER OS04G0595300 PROTEIN 11 726 - -
Ssu5g2526 728 MobiDBLite consensus disorder prediction 141 158 - -
Ssu5g2526 728 CDD HBS1_C_III 615 723 - -
Ssu5g2526 728 MobiDBLite consensus disorder prediction 203 232 - -
Ssu5g2526 728 MobiDBLite consensus disorder prediction 141 232 - -
Ssu5g2526 728 Gene3D Translation factors 525 614 - -
Ssu5g2526 728 Pfam Elongation factor Tu GTP binding domain 300 516 IPR000795 GO:0003924|GO:0005525
Ssu5g2526 728 Gene3D - 288 521 IPR027417 -
Ssu5g2526 728 MobiDBLite consensus disorder prediction 175 192 - -
Ssu5g2526 728 Gene3D Translation factors 618 727 - -
Ssu5g2526 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 542 IPR027417 -
Ssu5g2526 728 Pfam Elongation factor Tu C-terminal domain 619 723 IPR004160 -
Ssu5g2526 728 PANTHER TRANSLATION FACTOR 11 726 - -
Ssu5g2526 728 MobiDBLite consensus disorder prediction 159 174 - -
Ssu5g2526 728 SUPERFAMILY Translation proteins 519 613 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2526 Ssu-Chr5 69270516 69280156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2526 97 726 Eukaryotic Initiation Factors Gene Family AT5G10630 59.968 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2526 K14416 - gmx:100801724 1286.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0703 1 15693290 15703572 Ssu5g2526 5 69270516 69280156 PCT