Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2525 ATGGGAATTCAGGGTTTTTTGCCGCTATTGAAATCGATTATGGTTCCAATCCACATCAAGGACTTGAAGGGTTGTTCTGTAGCGGTAGACACCTACTCTTGGCTCCACAAAGGTGCCCTCTCTTGCAGCACCGAACTCTGCAAAGGGATACCCACTACCAGGCACATTGAGTATTGCATGCACAGAGTAAATTTGTTTCGCCATTTTGGGGTTAAGCCTATTCTAGTGTTTGATGGAGGGCTTCTGCCAATGAAGAGTGAACAAGAGAACAAGCGTGCCAGGGCTAGGAAGGATAATTTTGCACGTGCAGTTGAACATGAGTCAGATGGAAATTCATCTGCTGCCTATGAGTGCTACCAGAAAGCGGTTGATATTTCACCTCTTGTTGCACGAGACCTAATTCAGGTATTGAAGCAGGAGAACGTGCATTATATTGTTGCTCCTTATGAGGCAGATGCCCAGATGACATTCTTGGCAATTAGTGGACAAGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTATTCCATGTTACGAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAGTCCTTGCCAGGTATGGGTCTCAAAAGGGCCCAtgcaagtattaaaaaatttagaagttatGACAAGGTTCTTAAGCACTTGATATACAGTGGAGTTTCTGTGCCTCCCTTTTATGAAGAGTCGTTCAAGAAGGCTATACTTACGTTCCAATATCAACGGGTTTATGATCCAATTAGTGAAAATATTGTCCATTTGTCTAATATACCTGATGATATTGGTGATGAGTTAGACTTTTTAGGCCCACCCATGCCAAAAGATATAGCACAAAGAATAGCAAAAGGGGATTTTGATCCAATTACCAAAATGCCATTTGAGGGGGAGAATCTTCCAGCTAGATTGGCAATTGTGGGAACTAGTCAATTCAAAACTCCTCATTCTGAAAGTGCGAAGAAAAAGATTGATTTGCCTGTGCAGAAGAATCTCTTGACCAAGTATTTTTGTTTTGCATCTCTTGAAGCGAAAAGGAAATTCAGAGCACCTCGGGTGTCACCTACTGCTGCTAATCAAAGTAAATTGGATTCCTCTTTTGTCAGTTCCCTGGAACATGAGACTTCAGAAGCTGCTGTTAATGAAACAAAGAACTCTACTGCATCAGTAATTGACTCTGAGAATTGGGGCAGTGTCCCTCCTCCTAATAGCCATaTTGAATATGGTTCTGCCACAAAAATTTCTGAATTTACAGAGTCTCCATGTCATGTGTCTATGGTGGGTGAGGAGAAGAAAAGCCCTGAACATACAGTACTGCAACAGCCCAGGCAGCCAATTCATAAACCGTGTCTGGGGTTGCATAAGGAGCATGAGCACACAAAAATACAAGACACAGTTGAAGGAAAATCAAGGGAGGCAACAAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTAGAAAAGAATGTTTGTGCCGAGAAACAAGATCACCTGTCCTCTGGCATTGTCATTGACGAGAGAAAAAATGCCATATCTGACAGTGATTTATGTAACAACCATTTGAAGAATAATGAACTGAAAAGGAAGATCTCCCCTATTGACAATATTCAAAATGAAAATTTGCAGCCCAGGCAAATGCACCGTGCTTCACCTGCTCATAATAATGGCTGCTGTGATCACAATGTTGACGGACCATTTACAGAGAATAATgctgaagaagaaaaatttggGACAAACATTTCCCATCTGGGCCAGTATTCAGAAATAGCTGAGAAGTCTATGGAAAGATTTGTCTCTGCGATATCAtcctttagatgcacttctggTTCTCGCGTCAGTGGTCTCCGAGCTCCTCTGAAAGATGTTCAAAACACTTCTGATGATAGgCCAAAAACTGTGGACTTTGGACAATATGCATATGTGCCAAAACAACCAAAGACTAGAAGAATAGCTCCTTGGAATTAA 2088 0.4004 MGIQGFLPLLKSIMVPIHIKDLKGCSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCMHRVNLFRHFGVKPILVFDGGLLPMKSEQENKRARARKDNFARAVEHESDGNSSAAYECYQKAVDISPLVARDLIQVLKQENVHYIVAPYEADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLRKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHASIKKFRSYDKVLKHLIYSGVSVPPFYEESFKKAILTFQYQRVYDPISENIVHLSNIPDDIGDELDFLGPPMPKDIAQRIAKGDFDPITKMPFEGENLPARLAIVGTSQFKTPHSESAKKKIDLPVQKNLLTKYFCFASLEAKRKFRAPRVSPTAANQSKLDSSFVSSLEHETSEAAVNETKNSTASVIDSENWGSVPPPNSHIEYGSATKISEFTESPCHVSMVGEEKKSPEHTVLQQPRQPIHKPCLGLHKEHEHTKIQDTVEGKSREATRKVIVRSAYFQHKQVEKNVCAEKQDHLSSGIVIDERKNAISDSDLCNNHLKNNELKRKISPIDNIQNENLQPRQMHRASPAHNNGCCDHNVDGPFTENNAEEEKFGTNISHLGQYSEIAEKSMERFVSAISSFRCTSGSRVSGLRAPLKDVQNTSDDRPKTVDFGQYAYVPKQPKTRRIAPWN 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2525 695 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Ssu5g2525 695 Gene3D - 209 281 - -
Ssu5g2525 695 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Ssu5g2525 695 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Ssu5g2525 695 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 668 IPR006084 -
Ssu5g2525 695 Gene3D - 1 207 - -
Ssu5g2525 695 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Ssu5g2525 695 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Ssu5g2525 695 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Ssu5g2525 695 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Ssu5g2525 695 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Ssu5g2525 695 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Ssu5g2525 695 SMART xpgn3 1 99 IPR006085 GO:0004518
Ssu5g2525 695 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 334 IPR036279 -
Ssu5g2525 695 SMART xpgineu 138 208 IPR006086 GO:0004518
Ssu5g2525 695 MobiDBLite consensus disorder prediction 588 610 - -
Ssu5g2525 695 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Ssu5g2525 695 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Ssu5g2525 695 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Ssu5g2525 695 PANTHER EXONUCLEASE 1 1 668 IPR032641 GO:0006281|GO:0035312
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2525 Ssu-Chr5 69244931 69251531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2525 1 256 Core DNA Replication Machinery Family AT5G26680 27.138 6.05e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2525 K10746 - gmx:100798062 1016.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2525 5 69244931 69251531 Ssu5g2525 5 69244931 69251531 ECH