Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2524 ATGCCAGGGAACAATTATAACTGCATCCCCTTAACACCAAGGTCTAGATTGGAGAGGCTTCTGAGGGAAAGAGAGCTAAGGAAATCCTTCAAGTATATTCAACCATCTGAGGAAGCAAGAGATGGCAACAAAGAGGGAGAACAATGTTATGGTGATTCATGCATAAGTGAGAATGAAATTTCGGTTATTCATTATGAGGAAGAGGTCACGGAAACGAATGCGGATGCAAGAGTTTTTTCAGATAGAAGCCAAAGGCAAGATGAGAGGCCAAGCAAACAACGTTTGTTGGTGGTAGCTAACAGGTTGCCGGTGTCTGCTGTTAGGAAGGGTGTGGAGTCATATCACCTTGAGATCAGTGTAGGCGGGCTAGTCAGTGCACTTCTAGGCAAGAAAAAtgAAGGTTGTATGAAGTTTATTGTTTCTGTTGAAGGTGTAAAGGAGTTTGATACCAGATGGATTGGGTGGGCTGGTGTGAATGTGCCTGATGATGTTGGGCAGAGAGCATTGACTAAAGCTTTAGCTGAAATGCGATGTATACCAGTATTTCTTGATGAGGAGATAGTTAATCAGTACTATAATGGCTACTGTAACAACATCTTATGGCCTCTATTTCATTACCTTGGGCTTCCGCAAGAAGACCGACTTGCTACCACCCGTACTTTCCAATCTCAATTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTAGTAAATAAACATTATGAGGAAGGAGATGTTGTTTGGTGCCATGATTACCACCTAATGTTCCTTCcaaaatgtttaaaagaataCAATGACAAAATGAAAGTTGGCTGGTTTCTCCATACACCCTTTCCTTCCTCAGAAATACATAGGACCCTACCATCCAGAACAGAGCTGTTGAGATCTGTACTTGCAGCTGACCTGGTGGGATTCCATACCTATGATTATGCAAGGCATTTTGTTAGTGCTTGTACTCGTATTCTTGGGCTTGAGGGCACACCCGAAGGAGTCGAAGATCAAGGGAAGCTGACCCGTGTGGCTGCGTTTCCTATTGGGATTGACTCTGATAGATTTATCCAAGCCCTTGAACTCCCTGAAGTCCAGGATCACATGAAAGAACTGAAAGAAAGATTCGCAGGCCGAAAGGTAATGTTGGGTGTTGATCGTCTTGATATGATAAAGGGAATTCCCCAGAAAATCTTGGCATTTGAAAAGTTCCTTGAGGAGAATTCGCACTGGCGTGATAAAGTTGTCTTGCTGCAAATTGCTGTACCTACTAGGACAGATGTTCCTGAATATCAAAAGCTTACAAGCCAAGTGCATGAGATTGTAGGACGCATCAACGGAAGATTTGGAACACTAACAGCTGTCCCAATACACCATCTGGATCGGTCACTTGACTTTCATGAGTTATGTGCACTCTATGCTGTAACTGATGTAGCACTTGTTACATCTTTAAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTTGCGTGTCAAGCATCCAAGAAGGGGGTTCTCATTTTAAGTGAGTTTGCAGGTGCCGCACAGTCTCTTGGTGCTGGTGCTATCTTGGTAAATCCATGGAACATCACAGAGGTTGCTGCTTCTATTGGTTATGCGTTGGATATGCCAGCTGATGAAAGAGAAAAACGACATCAGTTTAATTTCAAGCATGTGAAGACTCACACGTCACAAGAATGGGCTGCAACTTTTGTGAGTGAACTGAATGATACCATTGTTGAAGCTCAGTTGAGGACAAGACAAGTTCCTCCATTACTTCCCAACAAAGTGGCAGTTGATTGTTACTCAAAATCCAATAACCGATTAATCATACTGGGTTTCAATGCCACTTTGACTGAACCAGTGGATGCCCTTGGAAGGGGTGGTCAAATTAGAGAACTGGAACTTAAATTACACCCAAATCTGAAGGAACCTTTAAAGATGTTATCTGACGATCCGAAAACAACAGTAGTTGTTCTGAGTGGGAGCGACCGAGCAGTCCTGGACAAAAACTTCAGTGAATTTAATATGTGGTTGGCAGCAGAAAATGGGATGTTTTTGCGACTTACTTCAAGAGAGTGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGCGTGAAGcATGTTTTTGAGTATTTTACTGAAAGAACTCCACGGTCTCATTTTGACCTTCGGGAGACTTCAATAGTATGGAATTACAAGTATGCAGATGTTGAGTTTGGAAGGATTCAAGCAAGAGATCTGCTTCAACATCTGTGGACAGGGCCAATATCAAATGCATCTCTTGATGTTGTCCAAGGTGGTCGATCTGTTGAGGTCCGCGCAGTTGGCGTGTCAAAGGTATAA 2352 0.4235 MPGNNYNCIPLTPRSRLERLLRERELRKSFKYIQPSEEARDGNKEGEQCYGDSCISENEISVIHYEEEVTETNADARVFSDRSQRQDERPSKQRLLVVANRLPVSAVRKGVESYHLEISVGGLVSALLGKKNEGCMKFIVSVEGVKEFDTRWIGWAGVNVPDDVGQRALTKALAEMRCIPVFLDEEIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRTFQSQFDAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEYNDKMKVGWFLHTPFPSSEIHRTLPSRTELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIQALELPEVQDHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSHWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHELCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALDMPADEREKRHQFNFKHVKTHTSQEWAATFVSELNDTIVEAQLRTRQVPPLLPNKVAVDCYSKSNNRLIILGFNATLTEPVDALGRGGQIRELELKLHPNLKEPLKMLSDDPKTTVVVLSGSDRAVLDKNFSEFNMWLAAENGMFLRLTSREWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFDLRETSIVWNYKYADVEFGRIQARDLLQHLWTGPISNASLDVVQGGRSVEVRAVGVSKV 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2524 783 Pfam Glycosyltransferase family 20 94 574 IPR001830 GO:0003824|GO:0005992
Ssu5g2524 783 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 93 577 - -
Ssu5g2524 783 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 94 574 IPR012766 GO:0003825|GO:0005992
Ssu5g2524 783 CDD GT20_TPS 94 574 IPR001830 GO:0003824|GO:0005992
Ssu5g2524 783 Gene3D - 634 782 IPR023214 -
Ssu5g2524 783 Gene3D - 698 778 - -
Ssu5g2524 783 Gene3D Glycogen Phosphorylase B; 85 355 - -
Ssu5g2524 783 Pfam Trehalose-phosphatase 634 782 IPR003337 GO:0003824|GO:0005992
Ssu5g2524 783 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 46 782 IPR001830 GO:0003824|GO:0005992
Ssu5g2524 783 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 46 782 - -
Ssu5g2524 783 SUPERFAMILY HAD-like 607 782 IPR036412 -
Ssu5g2524 783 Gene3D Glycogen Phosphorylase B; 356 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2524 Ssu-Chr5 69234486 69242389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2524 1 782 Trehalose Biosynthesis Gene Families AT1G78580 79.823 0.0 1273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2524 K16055 - gmx:100816642 1421.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2524 5 69234486 69242389 Ssu5g2524 5 69234486 69242389 ECH