LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g2521	ATGTCTTTTCCAAACCAATCCATGTCATCAGTTTCTCCCCGGAGAAAGATGGGAAGGGGGAAGATTGAGATCAGGCGGATTGAGAACACCACCAATCGTCAAGTTACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATTGTCTTTTCAAGCCGTGGCCGCCTCTATGAATATGCTAATAACAGCGTCAAAGCTTCAATTGAGAGGTACAAGAAAGCGAGTTCAGCTTCATCTAGTGGTGGATCTGCTTCTGAGACTAATGCTCAGTTCTACCAGCAAGAAGCTGCCAAACTGCGTGTGCAAATCAGCAATCTGCAGAATCACAATAGGCAAGTTGAATTAGCATTGAGCACTATGAATGCCAAGGATCTCAAAAACCTTGAGACTAAATTAGAGAAAGGAATTAGCAGAATTCGTTCCAAGAAGAATGAGCTGCTATTTGCAGAAATTGAGTACATGCAGAAGAGGGAGATAGACTTGCACAATAACAATCAGCTTCTTAGAGCAAAGATAGCCGAAAGTGAGAGGAGTAGCCATAATGTTAACGTGTTGTCTGGAAGCACAGGCTACGAATCCATGCAATCTCAGTTTGAATCTCGCGGCTTCTTCCAAGTGACCGGATTACAACCCAATAATAATCAGTATGCCGGCCAAGACCAGATGTCCCTTCAATTTGTGTGA	726	0.4366	MSFPNQSMSSVSPRRKMGRGKIEIRRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKASIERYKKASSASSSGGSASETNAQFYQQEAAKLRVQISNLQNHNRQVELALSTMNAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERSSHNVNVLSGSTGYESMQSQFESRGFFQVTGLQPNNNQYAGQDQMSLQFV	241

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g2521	241	PRINTS	MADS domain signature	39	54	IPR002100	GO:0003677\|GO:0046983
	Ssu5g2521	241	PRINTS	MADS domain signature	19	39	IPR002100	GO:0003677\|GO:0046983
	Ssu5g2521	241	PRINTS	MADS domain signature	54	75	IPR002100	GO:0003677\|GO:0046983
	Ssu5g2521	241	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	26	73	IPR002100	GO:0003677\|GO:0046983
	Ssu5g2521	241	MobiDBLite	consensus disorder prediction	1	20	-	-
	Ssu5g2521	241	CDD	MADS_MEF2_like	18	87	IPR033896	GO:0000977\|GO:0045944
	Ssu5g2521	241	ProSiteProfiles	MADS-box domain profile.	17	77	IPR002100	GO:0003677\|GO:0046983
	Ssu5g2521	241	Gene3D	-	29	99	IPR036879	GO:0003677\|GO:0046983
	Ssu5g2521	241	Coils	Coil	139	159	-	-
	Ssu5g2521	241	SMART	madsneu2	17	76	IPR002100	GO:0003677\|GO:0046983
	Ssu5g2521	241	Coils	Coil	103	137	-	-
	Ssu5g2521	241	SUPERFAMILY	SRF-like	18	91	IPR036879	GO:0003677\|GO:0046983
	Ssu5g2521	241	ProSitePatterns	MADS-box domain signature.	19	73	IPR002100	GO:0003677\|GO:0046983
	Ssu5g2521	241	PANTHER	MADS BOX PROTEIN	11	235	-	-
	Ssu5g2521	241	ProSiteProfiles	K-box domain profile.	103	192	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ssu5g2521	241	PANTHER	AGAMOUSB	11	235	-	-
	Ssu5g2521	241	Pfam	K-box region	100	186	IPR002487	GO:0003700\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g2521	Ssu-Chr5	69174271	69180003	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g2521	15	241	MADS-box Gene Family	AT3G58780	63.983	1.59e-99	288

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Ssu5g2521		K-box	6.2e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g2521	K09264		-	gmx:100776263	390.578

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g2521	5	69174271	69180003	Ssu5g2521	5	69174271	69180003	ECH
	Ssu5g2521	5	69174271	69180003	Ssu1g0636	1	14436271	14445019	PCT