LGRPv2

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g2510	ATGGAAGAGAATTCAGCAACAAATGGAACCACCCATGAGGCGGTTTTAGATGTAAACAAGGATGTCTCTAGAACAAGAGAAGACTCACGCTcttgtgtcaatgtttcttTCGTGCAGAAGTTGGTAGCCGAGGTGGTGGGCACGTATTTCTTGATATTTGCGGGGTGTGCTTCGGTGGTGGTGAACAAAAACAACGACAACGTGGTAACACTTCCTGGGATATCAATTGTTTGGGGACTGACTGTAATGGTGCTGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCTTTTGCCTCCACCAAAAGGTTTCCCTTGAAGCAGGTGCCAGTTTATGTAGTAGCTCAGGTTGTTGGATCCACACTTGCAAGTGGGACTCTCAGACTATTATTTAGTGGCAAGGATGACCAGTTTTCAGGAACACTCCCAGCTGAGTCTAACGCGCAAGCTTTTGTGATTGAATTCATAATAACCTTTTTCCTGATGTTTGTCATATCCGGGGTTGCCACCGATAACAGAGCGATTGGTGAGTTGGCCGGGATTGCCGTTGGGTCCACAGTGCTGTTAAATGTGATGTTTGCAGGGCCAATCACAGGAGCATCAATGAACCCAGCAAGAAGCATAGGGCCTGCCTTTGTACACAATGAATACAAAGCAATATGGCTATATTTAGTGTCTCCTACTCTGGGGGCTGTGGCTGGCGCATGGGTCTACAACACTATTCGGTACACGGACAAGCCACTGCGTGAGATCACTAAGAGTGCCTCTTTCCTTAACGGATCAGTGCGTAGTGGTGGCTCTAGGTGA	828	0.4662	MEENSATNGTTHEAVLDVNKDVSRTREDSRSCVNVSFVQKLVAEVVGTYFLIFAGCASVVVNKNNDNVVTLPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAFASTKRFPLKQVPVYVVAQVVGSTLASGTLRLLFSGKDDQFSGTLPAESNAQAFVIEFIITFFLMFVISGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAFVHNEYKAIWLYLVSPTLGAVAGAWVYNTIRYTDKPLREITKSASFLNGSVRSGGSR	275

Showing 1 to 1 of 1 entries

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu5g2510	275	PANTHER	AQUAPORIN NIP2-1	1	268	IPR034294	-
Ssu5g2510	275	TIGRFAM	MIP: MIP family channel proteins	43	245	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Ssu5g2510	275	PRINTS	Major intrinsic protein family signature	160	178	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Ssu5g2510	275	PRINTS	Major intrinsic protein family signature	115	134	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Ssu5g2510	275	PRINTS	Major intrinsic protein family signature	191	213	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Ssu5g2510	275	PRINTS	Major intrinsic protein family signature	78	102	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Ssu5g2510	275	PRINTS	Major intrinsic protein family signature	228	248	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Ssu5g2510	275	PRINTS	Major intrinsic protein family signature	39	58	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Ssu5g2510	275	Gene3D	Glycerol uptake facilitator protein.	2	260	IPR023271	-
Ssu5g2510	275	CDD	MIP	39	248	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

Showing 1 to 10 of 14 entries

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g2510	Ssu-Chr5	69044001	69046496	Dispersed/Tandem

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g2510	35	266	Major Intrinsic Protein MIP	AT5G37810	63.793	2.04e-107	311

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g2510	K09874		-	gmx:100794883	465.307

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g2510	5	69044001	69046496	Ssu5g2510	5	69044001	69046496	ECH
	Ssu5g2510	5	69044001	69046496	Ssu1g0618	1	13914040	13933025	PCT

Showing 1 to 2 of 2 entries