Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2510 ATGGAAGAGAATTCAGCAACAAATGGAACCACCCATGAGGCGGTTTTAGATGTAAACAAGGATGTCTCTAGAACAAGAGAAGACTCACGCTcttgtgtcaatgtttcttTCGTGCAGAAGTTGGTAGCCGAGGTGGTGGGCACGTATTTCTTGATATTTGCGGGGTGTGCTTCGGTGGTGGTGAACAAAAACAACGACAACGTGGTAACACTTCCTGGGATATCAATTGTTTGGGGACTGACTGTAATGGTGCTGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCTTTTGCCTCCACCAAAAGGTTTCCCTTGAAGCAGGTGCCAGTTTATGTAGTAGCTCAGGTTGTTGGATCCACACTTGCAAGTGGGACTCTCAGACTATTATTTAGTGGCAAGGATGACCAGTTTTCAGGAACACTCCCAGCTGAGTCTAACGCGCAAGCTTTTGTGATTGAATTCATAATAACCTTTTTCCTGATGTTTGTCATATCCGGGGTTGCCACCGATAACAGAGCGATTGGTGAGTTGGCCGGGATTGCCGTTGGGTCCACAGTGCTGTTAAATGTGATGTTTGCAGGGCCAATCACAGGAGCATCAATGAACCCAGCAAGAAGCATAGGGCCTGCCTTTGTACACAATGAATACAAAGCAATATGGCTATATTTAGTGTCTCCTACTCTGGGGGCTGTGGCTGGCGCATGGGTCTACAACACTATTCGGTACACGGACAAGCCACTGCGTGAGATCACTAAGAGTGCCTCTTTCCTTAACGGATCAGTGCGTAGTGGTGGCTCTAGGTGA 828 0.4662 MEENSATNGTTHEAVLDVNKDVSRTREDSRSCVNVSFVQKLVAEVVGTYFLIFAGCASVVVNKNNDNVVTLPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAFASTKRFPLKQVPVYVVAQVVGSTLASGTLRLLFSGKDDQFSGTLPAESNAQAFVIEFIITFFLMFVISGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAFVHNEYKAIWLYLVSPTLGAVAGAWVYNTIRYTDKPLREITKSASFLNGSVRSGGSR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2510 275 PANTHER AQUAPORIN NIP2-1 1 268 IPR034294 -
Ssu5g2510 275 TIGRFAM MIP: MIP family channel proteins 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2510 275 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2510 275 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2510 275 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2510 275 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2510 275 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2510 275 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2510 275 Gene3D Glycerol uptake facilitator protein. 2 260 IPR023271 -
Ssu5g2510 275 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2510 275 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 268 - -
Ssu5g2510 275 Pfam Major intrinsic protein 34 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2510 275 SUPERFAMILY Aquaporin-like 32 259 IPR023271 -
Ssu5g2510 275 ProSitePatterns MIP family signature. 96 104 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2510 Ssu-Chr5 69044001 69046496 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2510 35 266 Major Intrinsic Protein MIP AT5G37810 63.793 2.04e-107 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2510 K09874 - gmx:100794883 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2510 5 69044001 69046496 Ssu5g2510 5 69044001 69046496 ECH
Ssu5g2510 5 69044001 69046496 Ssu1g0618 1 13914040 13933025 PCT