Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2509 ATGAGCAACTTTTTTGGTGCCTATAAATTGGAGTTGTTTGCAAAGTTTTCATTTGTAGTTGAGGAGACAGACAGAGCAGACTGTCCAGGGCAGTTTACAAGTCCAAGTTTTATTCCTCAGTTGTTTCCTTGCTCTCTGTCGTTGATGGCTGATTATTCAGCAGGAACCGGAACCCATGAGGTAGTTGTAAATGTAACCAAGGACGCCTCCAAAACATGTGAACGCTCAGACTCCTTTGTCTCTGTTCCTTTCTTGCAGAAGCTGGTAGCTGAGGTGGTGGGCACGTATTTCTTGATATTTGTTGGCTGTGCTTCAGTGGTGGTGAACAAGAACAACGATAATGTGGTGACCCTTCCCGGGATAGCAATTGCTTGGGGGCTGGTTGTGATGGTGCTGGTTTACTCTGTTGGTCATATCTCTGGTGCCCATTTCAATCCTGCTGTGACCATTGCTTTTGCCTCCACCAGAAGGTTTCCCTTGATGCAGGTACCAGCTTATATAGCAGCTCAACTCCTGGGAAGCACACTTGCAAGTGGAACTCTCAGACTAATATTTATGGGAAGGCATGACCAGTTTTCAGGAACACTGCCATCTGGGTCTGACCTGCAAGCTTTTGTGCTTGAATTCATAATCACCTTTTTCCTTATGTTTGTCATATCCGGGGTAGCCACCGATAACAGAGCGATTGGTGAGTTGGCTGGGATTGCAATTGGGTCTGCGATACTGCTGGGTGTGATTATTGGAGGGCCAATCACAGGAGCATCGATGAACCCAGTTAGAAGCCTAGGACCTGCTTTTGTACACACCGAATACAGAGGAATATGGATATACTTGTTGGCACCGGTTCTGGGGGCCGTGGCTGGAGCATGGGTCTACAACATCATTAGGTACACGGACAAGCCATTGCGTGAGATCACCAAGAGTGCCTCTTTCCTCAAAGGGCGTGGTGGAACCAAATAA 960 0.4729 MSNFFGAYKLELFAKFSFVVEETDRADCPGQFTSPSFIPQLFPCSLSLMADYSAGTGTHEVVVNVTKDASKTCERSDSFVSVPFLQKLVAEVVGTYFLIFVGCASVVVNKNNDNVVTLPGIAIAWGLVVMVLVYSVGHISGAHFNPAVTIAFASTRRFPLMQVPAYIAAQLLGSTLASGTLRLIFMGRHDQFSGTLPSGSDLQAFVLEFIITFFLMFVISGVATDNRAIGELAGIAIGSAILLGVIIGGPITGASMNPVRSLGPAFVHTEYRGIWIYLLAPVLGAVAGAWVYNIIRYTDKPLREITKSASFLKGRGGTK 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2509 319 PANTHER NODULIN-26 49 317 - -
Ssu5g2509 319 SUPERFAMILY Aquaporin-like 80 306 IPR023271 -
Ssu5g2509 319 Gene3D Glycerol uptake facilitator protein. 51 307 IPR023271 -
Ssu5g2509 319 TIGRFAM MIP: MIP family channel proteins 90 292 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2509 319 ProSitePatterns MIP family signature. 143 151 IPR022357 -
Ssu5g2509 319 PANTHER AQUAPORIN NIP2-1 49 317 IPR034294 -
Ssu5g2509 319 Pfam Major intrinsic protein 80 292 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2509 319 PRINTS Major intrinsic protein family signature 162 181 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2509 319 PRINTS Major intrinsic protein family signature 275 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2509 319 PRINTS Major intrinsic protein family signature 86 105 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2509 319 PRINTS Major intrinsic protein family signature 207 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2509 319 PRINTS Major intrinsic protein family signature 238 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2509 319 PRINTS Major intrinsic protein family signature 125 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu5g2509 319 CDD MIP 86 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2509 Ssu-Chr5 69033813 69038155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2509 59 313 Major Intrinsic Protein MIP AT5G37810 57.088 7.13e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2509 K09874 - gmx:100813448 466.077