Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2507 ATGGATGAAGCACAGGGTAGTTCAAGTTCCCTGCCTCCTTTCCTGACAAAGACTTATGAGATGGTGGATGATCCTTCCACGGATTCGATTGTTTCGTGGAGTGTCACTAGCAAGAGTTTCATTGTATGGAATCCCCCAGAATTTGCAGGTGATTTGCTGCCTAGATTCTTTAAGCACAACAACTTCTCAAGTTTCATCAGGCAGCTGAACACATATGGATTTAGAAAAGTTGACCCAGAACAATGGGAGTTTGCCAATGATGATTTTGTAAGAGGGCAACCTCATCTTATGAAGAATATCCATAGACGGAAGCCGGTTCATAGCCATTCTTTACAGAATATCCAAGCACAGGTCCCACTCGAGGAGTCAGAAAGGCAGAGTTTTACTGATGAAATAGAGAAGCTTCAACACGATAAAGAGCGACTTCTTGAGGAGTTACAGAGATATCAACATGAGTGGCAGACATATGAGATACAAATCCGTTGCTCAAAAGATCGGTTGGAGAAATTGGAACAGAAGCAACAAAAGATCGTTTCTTCTGTTTCTCACGTATTGCAGAAACCTGTGATTGCTATAAATATCTTGCCTCTGACAGAAACCATGGATAGAAAACGAAGGTTGCCAAGAAGTGGCCACTTTAATGATGGAGCTAGCATTGAAGATGCTATTGAAACTGCCCTAATGTTATCAAGAGAAAATGCAGAGAATGCCTCTCTCTTGACATTAAACATGGAGCGATTGGATCAGCTTGAATCATCCATGGCATTTTGGGAGGCTATTGCACATGATATTGGTGACACCTTCATTCATATTCAGTCAAACATGGATTTTGATGAATCTACAAGTTGTGCTGATAGTCCGTCTATATCTTGTGCGCAATTAGATGTTGAAGTTCGGCCTAAGTCATCTGGAATTGACATGAACTCTGACCCAACTGCAGCTGCTGTTCCTGAGCCTGTTGCATCAAAAGAACAACCTGCAGGAACCACGGTTGCAGCAACTGGTGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCTGGTGCATCAGAAACACAGGAAGTGCAGTCAGAAAGAAAGGATTATGATGGCAGAAAGAATGAAGGAAAACCTAGTGACCTTAGTAAATTTTGGTGGAACAAACGGAATGCAAATAATCTTCCAGAACAGATGGGGCATGTTGGTCAAGCAGAGAAAACTTAG 1209 0.4202 MDEAQGSSSSLPPFLTKTYEMVDDPSTDSIVSWSVTSKSFIVWNPPEFAGDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNIQAQVPLEESERQSFTDEIEKLQHDKERLLEELQRYQHEWQTYEIQIRCSKDRLEKLEQKQQKIVSSVSHVLQKPVIAINILPLTETMDRKRRLPRSGHFNDGASIEDAIETALMLSRENAENASLLTLNMERLDQLESSMAFWEAIAHDIGDTFIHIQSNMDFDESTSCADSPSISCAQLDVEVRPKSSGIDMNSDPTAAAVPEPVASKEQPAGTTVAATGVNDVFWEQFLTEDPGASETQEVQSERKDYDGRKNEGKPSDLSKFWWNKRNANNLPEQMGHVGQAEKT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2507 402 MobiDBLite consensus disorder prediction 354 374 - -
Ssu5g2507 402 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g2507 402 Coils Coil 125 173 - -
Ssu5g2507 402 Gene3D - 6 104 IPR036388 -
Ssu5g2507 402 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 383 - -
Ssu5g2507 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 383 IPR027725 -
Ssu5g2507 402 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g2507 402 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g2507 402 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g2507 402 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g2507 402 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g2507 402 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Ssu5g2507 402 MobiDBLite consensus disorder prediction 303 327 - -
Ssu5g2507 402 MobiDBLite consensus disorder prediction 347 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2507 Ssu-Chr5 68959172 68960497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2507 7 402 HSF AT4G18880 53.317 2.50e-126 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu5g2507 HSF_DNA-bind 5.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2507 K09419 - gmx:100798004 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2507 5 68959172 68960497 Ssu5g2507 5 68959172 68960497 ECH
Ssu1g0608 1 13623178 13625888 Ssu5g2507 5 68959172 68960497 ECH
Ssu5g2507 5 68959172 68960497 Ssu1g0608 1 13623178 13625888 PCT