Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2506 ATGAAGTGGGGTGgaagaaaaccttcttcttcttctaagcCTTCTTTCATATCTCATGTATCCCCTTTCTCATGGCTGTCCAAGTTCAAGCAGATGAAAATCAACTCAGAGCCAAAACCTGGCACACTTAAGCAGAATGCAAAGCAGAATTCAAATCCATCTGATAGTTCACCCCATTATGCTTGTGGGAATGGAGGCAGGTTTTATGGAAAGGACGATGAGGCTTTCTGGAGACTCTCATTTGGTGAAGAGGGTAATGTGCATAGGAAAAGTGAAGATATTCTGAAACCAGCAGTGTACAACTTGGATGCTGAACATGTCACTCCATCCTCAAGTTTCCAGAGTGGTGGACTGAATGCTAAAAGACAAGTTAGAAAAGAAGGCACTCAGAAGTTGAAGCAGAAGGAAACAGGActgagagaagaaagaaaattgctGGCTGAAGCAGCAAAGAGTTTAAAGGAACTTGAACCCTTAAGGAGGAGATATGAGAGGAAAGCACAAAGAGTTTTGCAAGAGCAACTCTTGAAATTGGAAAAAGCAGAAGAGGAAGCTGAGTTTGCATCAAGTCCATCCTTAGAAAATGACGTGCTGCAGTTTGAGTCACCAAGAGCAATTTGCACACCAAGAAAGCACTTGTTTTCCTCTTCTGTGGATTCAAAGAGTTATGGCCTTGGAAGTCTCAGAGAAGCTCGTGGTTGTAGTCCCCGGTTGGGTTCTGAGTGGCATAATTTGCAACAAACCGAGGAgttgaaattgaaaacaaagagTAACAAACAAAGGCAATCAGTTCATGTGAGCAGAGAAAACCAGAGGAGGAAACCAAAGCACAACTCCAAGGTTAGAGTGTATTCTCCAAGGATGGGTTCCAAGGTTGAAGTCCGCAAAATAAAGGCcatagaagagaagaagaaagcaaaACTGAAGATGAGGAAAGAAGAGGAAATTGTGGAGGAAACAGAAGGGTTAGATAGCTTTGCTGTGGTGAAATGTTCTTTGGATCCACAGAAAGATTTCAGAGATTCAATGATTGAGATGATCACAGAGAAACAGATAAGCCAGCCAGATGAAATGGAAGATCTGCTAGCATGTTATCTGACTTTGAATTCTAATGAGTACCATGATCTCATCATCGAAGTGTTCAAGCAGGTATGGTCGTGTATAAGCCAAGCCAGTTCGGCTATTCAATCAAACAAGCAATGTAGCTGTTGTGATTAA 1218 0.3924 MKWGGRKPSSSSKPSFISHVSPFSWLSKFKQMKINSEPKPGTLKQNAKQNSNPSDSSPHYACGNGGRFYGKDDEAFWRLSFGEEGNVHRKSEDILKPAVYNLDAEHVTPSSSFQSGGLNAKRQVRKEGTQKLKQKETGLREERKLLAEAAKSLKELEPLRRRYERKAQRVLQEQLLKLEKAEEEAEFASSPSLENDVLQFESPRAICTPRKHLFSSSVDSKSYGLGSLREARGCSPRLGSEWHNLQQTEELKLKTKSNKQRQSVHVSRENQRRKPKHNSKVRVYSPRMGSKVEVRKIKAIEEKKKAKLKMRKEEEIVEETEGLDSFAVVKCSLDPQKDFRDSMIEMITEKQISQPDEMEDLLACYLTLNSNEYHDLIIEVFKQVWSCISQASSAIQSNKQCSCCD 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2506 405 MobiDBLite consensus disorder prediction 253 269 - -
Ssu5g2506 405 MobiDBLite consensus disorder prediction 34 65 - -
Ssu5g2506 405 MobiDBLite consensus disorder prediction 38 59 - -
Ssu5g2506 405 MobiDBLite consensus disorder prediction 253 284 - -
Ssu5g2506 405 Coils Coil 164 184 - -
Ssu5g2506 405 Pfam Transcriptional repressor, ovate 332 387 IPR006458 -
Ssu5g2506 405 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 327 387 IPR006458 -
Ssu5g2506 405 MobiDBLite consensus disorder prediction 110 136 - -
Ssu5g2506 405 Coils Coil 303 323 - -
Ssu5g2506 405 PANTHER TRANSCRIPTION REPRESSOR OFP4 8 401 - -
Ssu5g2506 405 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 8 401 IPR038933 GO:0045892
Ssu5g2506 405 ProSiteProfiles OVATE domain profile. 328 387 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2506 Ssu-Chr5 68944815 68946032 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Ssu5g2506 Ovate 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2506 - - gmx:106798868 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2506 5 68944815 68946032 Ssu1g0607 1 13613667 13614872 PCT