Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2505 ATGGTGGCTATCACGAGGTATTGCAGGTTTTTGTTGTTTGGGTTTGAGGAAGAGTTGGAAATTGAGATTCAGAAGAAGGGGAGGAAGACGTTGATTGCTCAGGAAATTGCTGAAACGTTTTTTACTGTTCCTAAGGACTTTTGCTGTCCGATTACGTTGGATTTGATGTGTGATCCTGTGATAATTTCTACCGGTCAAACTTATGATAGGATGTCTATATGGAGGTGGATGGAGGACGGACACTGTACTTGTCCAAAAACGGGGCAATTGCTCGCTCATAATAGGCTTGTTCGTAATCGTGCTCTTAGGAATTTGATTATGCAGTGGTGCAGTGCACATGGGGTACCCTATGATCCACCTGAGGGGGTTGATGCATCTGTTGAGATGTTTGCATCAGCTTGTCCCTCCAAAGCTGCCCTTGAGGCTAACCGAGGGACGGCCACGCTTCTCATTCAGCAGCTTGCTGATGGGTCGCAAGCTGCGAAGACTCTGGCTGCTAGGGAGATAAGATTGCTGGCAAAAACTGGGAAGGAAAACCGTGCCTTCATTGCGCAAGCCGGGGCAATTCCTCATCTTAGGAACTTGCTTTCCTCTCCTAATGCTGTTGCACAGGAGAATTCTGTGACTGCGCTGCTCAACCTATccatttttgaaagaaataaaagtatgatCATGGAGGAGGAAGGGTGTTTGGGATCAATAGTTGAGGTGTTGCGATTCGGGCACACCACTGAGGCAAGGGAGAATGCTGCTGCAACATTGTTCAGCCTCTCTGCTGTCCATGTGTACAAGAAACGAATTGCTGATAATGTGGGAGCTGTTGAAGCATTGGCATGGTTGTTGCAAGGGGGGACTCAAAGAGGGAGAAAGGATGCTGTCACAGCATTGTTTAATCTCTCCACTCACactgagaattgtttgaaaatgatagagGCAGGGGCAGTGAAAGCCATGGTTTTGGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCCGGTGCCTTGGCCTTGATTGTTCGGCAGCCTGTTGGTGCGATAGCCGTGGTAAGGGAGGAGGCAGCGGTGGCTGGATTGATAGGAATGATGCGTTGTGGAACGCCAAGAGGTAAAGAAAATGCAGTTGCAGCTTTGCTGGAGCTGTGCAGGAGTGGTGGTGCAGCTGCAACTGAAAGGGTTGTTAGGGCGCCAGCTTTGGCCGGATTACTTCAAACCTTGCTTTTTACAGGGACAAAGAGGGCAAGAAGAAAGGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATATCTACATTATGGTGGATTAGGTGTGGGTTATGCATTTGCTAGCGATTCAGCTTCAACTGGGAATACTACAAGCTTTTCATCAAGTATAGCAATACCAAATATATTCCAAGAGAATGATGTGTTGTTCAGCAGTTAG 1428 0.4622 MVAITRYCRFLLFGFEEELEIEIQKKGRKTLIAQEIAETFFTVPKDFCCPITLDLMCDPVIISTGQTYDRMSIWRWMEDGHCTCPKTGQLLAHNRLVRNRALRNLIMQWCSAHGVPYDPPEGVDASVEMFASACPSKAALEANRGTATLLIQQLADGSQAAKTLAAREIRLLAKTGKENRAFIAQAGAIPHLRNLLSSPNAVAQENSVTALLNLSIFERNKSMIMEEEGCLGSIVEVLRFGHTTEARENAAATLFSLSAVHVYKKRIADNVGAVEALAWLLQGGTQRGRKDAVTALFNLSTHTENCLKMIEAGAVKAMVLALGNEGVAEEAAGALALIVRQPVGAIAVVREEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENAYLHYGGLGVGYAFASDSASTGNTTSFSSSIAIPNIFQENDVLFSS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2505 475 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 1 448 - -
Ssu5g2505 475 SMART Ubox_2 46 109 IPR003613 GO:0004842|GO:0016567
Ssu5g2505 475 Pfam Armadillo/beta-catenin-like repeat 177 215 IPR000225 GO:0005515
Ssu5g2505 475 SUPERFAMILY RING/U-box 32 117 - -
Ssu5g2505 475 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 187 229 IPR000225 GO:0005515
Ssu5g2505 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 117 IPR013083 -
Ssu5g2505 475 Pfam U-box domain 43 113 IPR003613 GO:0004842|GO:0016567
Ssu5g2505 475 PANTHER U BOX DOMAIN-CONTAINING 1 448 - -
Ssu5g2505 475 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 272 314 IPR000225 GO:0005515
Ssu5g2505 475 Gene3D - 268 426 IPR011989 -
Ssu5g2505 475 Gene3D - 148 267 IPR011989 -
Ssu5g2505 475 CDD RING-Ubox_PUB 47 89 IPR045210 -
Ssu5g2505 475 SMART arm_5 342 382 IPR000225 GO:0005515
Ssu5g2505 475 SMART arm_5 176 216 IPR000225 GO:0005515
Ssu5g2505 475 SMART arm_5 261 301 IPR000225 GO:0005515
Ssu5g2505 475 SMART arm_5 218 259 IPR000225 GO:0005515
Ssu5g2505 475 SMART arm_5 302 340 IPR000225 GO:0005515
Ssu5g2505 475 SUPERFAMILY ARM repeat 143 424 IPR016024 -
Ssu5g2505 475 ProSiteProfiles U-box domain profile. 42 116 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2505 Ssu-Chr5 68927208 68928761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2505 1 463 U-box Gene Family AT1G29340 69.574 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2505 - - gmx:100797462 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2505 5 68927208 68928761 Ssu5g2505 5 68927208 68928761 ECH
Ssu5g2505 5 68927208 68928761 Ssu1g0606 1 13589697 13591844 PCT