Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2493 ATGGATAGTAAGTTCAGCAACAGCCGCAAGTCATATATCAACGAACAAGAAGACACTGATGCAGCTCAAGAAAACAATATTGCCGAGTCCCCTCCTTCTTCCACTATGTTCAACATCGATGGCTTAGTCACCTCCCCCACTTCTTCATCAAAGAGAAGGAGAGCCATACAGAAAAGGGTGGTGCAAATCCCAATCAAGGAGACAGAAGGGTGCAGGCTAAAAGGAGAGAGCAACACCCCACCCTCGGATTCATGGGCATGGAGAAAGTATGGCCAGAAACCCATCAAGGGTTCCCCTTATCCCAGAGGGTACTACAGGTGTAGCAGTTCGAAGGGGTGTCCGGCACGGAAACAAGTGGAAAGGAGCTGCGTGGACCCCACAATGTTAGTCGTCACTTACTCCTCCGACCACAACCATCCCTGGCCCGTTTCTAGAAACCACGCCAGGCCCACGAAGAAACCCGAGCCCGAACCGGTTGCGGAACCGGAGCCCGAACCGGAGGAGAAGTTCGCGGACCTGGGCGGGGACGAGTCCATGATCACCTCCGCGGACGAGTTGGGGTGGCTGGGGGAGATGGAAACGACGTCGTCCACGGTGCTCGAAAGCCCGATCATGGCCGCCGGGTTTCACGCTGACGTGGCGCTGTTGCCGATGCGGGAAGAGGACGAGTCGCTCTTCGCCGACCTCGGGGAGCTGCCGGAGTGCTCCCTGGTGTTCCGGCAGGGGCTCATGGCGGAGCGGCGGCGGTTCACGGCGCCGTGGTGTGGGACCACAATCTGA 780 0.5795 MDSKFSNSRKSYINEQEDTDAAQENNIAESPPSSTMFNIDGLVTSPTSSSKRRRAIQKRVVQIPIKETEGCRLKGESNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSCVDPTMLVVTYSSDHNHPWPVSRNHARPTKKPEPEPVAEPEPEPEEKFADLGGDESMITSADELGWLGEMETTSSTVLESPIMAAGFHADVALLPMREEDESLFADLGELPECSLVFRQGLMAERRRFTAPWCGTTI 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2493 259 SMART WRKY_cls 81 141 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g2493 259 MobiDBLite consensus disorder prediction 71 92 - -
Ssu5g2493 259 MobiDBLite consensus disorder prediction 148 172 - -
Ssu5g2493 259 MobiDBLite consensus disorder prediction 1 56 - -
Ssu5g2493 259 Pfam WRKY DNA -binding domain 83 140 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu5g2493 259 MobiDBLite consensus disorder prediction 137 172 - -
Ssu5g2493 259 SUPERFAMILY WRKY DNA-binding domain 79 142 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g2493 259 Gene3D WRKY domain 70 143 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu5g2493 259 PANTHER WRKY TRANSCRIPTION FACTOR 65-RELATED 1 243 - -
Ssu5g2493 259 MobiDBLite consensus disorder prediction 18 51 - -
Ssu5g2493 259 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 243 IPR044810 GO:0003700
Ssu5g2493 259 MobiDBLite consensus disorder prediction 1 17 - -
Ssu5g2493 259 ProSiteProfiles WRKY domain profile. 82 142 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2493 Ssu-Chr5 68649819 68651116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2493 18 241 WRKY Transcription Factor Family AT1G29280 56.723 1.08e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu5g2493 WRKY 5.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2493 - - gmx:100127392 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2493 5 68649819 68651116 Ssu5g2493 5 68649819 68651116 ECH