Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2488 ATGAAGAATTGTGATGAGTGGAAACCTTTCCTAGTAATGATAGCAATTGATATTTCTTTAACCATGGTGAACATTCTTCTCAAGAAAGTCCTTCAAGAAGGAATGAACCATTTGGTTTTCATCACATATCGTCTGTCAGTTTCTACTATATTTTTGGCCCCCATTGGCTACTTTAAGGAAAGAAATGGAAGACCACGGCtcacatttcaaattttatgctaCCTTTTCTTCAGTGCCATTATCGGGGCATCCGTCACACAATACTTCTTCCTTCTGGGGATGCAATACACCTCAGCTACCTTTGCTTGTGCCTTTGTCAATATGGGGCCGGTGATCACATTCATTATGGCATTGCCATTTGGAATAGAAACTGTGAACATTAAATGCAAAGGTGGACAAGCGAAGATTCTTGGTACATTTGTGTGCATAGGAGGGGCATTGTTGTTGACACTTTACAAAGGAAAGCCCTTGTTTGATGACTCTCACTATCAATCTGCAGTTCCTCCAGTAGCCATGAGATCTGCAATGGACCAAGATTCTACGACTAGAATAACACAGAAATGGACCATTGGTGTAATAGCTTTGATTATGGGAACTCTCTTTTGgtctttttggtttattttacaGTCAAAGATAGGCAAGAGATACCCATGCCAGTATTCTAGCACAGCCATTATGACCTTCTTTGGAGCCATGCAAGCAGCTATTCTTGGTTTATCCACTGGCAGCAACTTGTCCACGTGGGTTCTCAAGGGAAAGATACAGATAATCACCGTTCTGTATTCTGGGATAGTTGGATCAAGTGTCTGCTACGTGGGCATGTCATGGTGCGTCAAGAAGAGGGGTCCGGTCTTCACTGCAGCGTTCAGCCCTCTTGTTCAGATAATGTCAGGCATGATTGATATCTCGGTCTTGCACGAGCAGCTTCATCTTGGAAGTGTGGTGGGGTCCATATTGGTGATGATCGGGTTGTACATTCTTCTGTGGGGCAAAAGAAAGGAGATGATGCAGAATGGCGCGACTAAGTTCGCCCAAGAAGTTGAGGAAACGAAGGAACAAGAGCCGCGAGTATAA 1074 0.4236 MKNCDEWKPFLVMIAIDISLTMVNILLKKVLQEGMNHLVFITYRLSVSTIFLAPIGYFKERNGRPRLTFQILCYLFFSAIIGASVTQYFFLLGMQYTSATFACAFVNMGPVITFIMALPFGIETVNIKCKGGQAKILGTFVCIGGALLLTLYKGKPLFDDSHYQSAVPPVAMRSAMDQDSTTRITQKWTIGVIALIMGTLFWSFWFILQSKIGKRYPCQYSSTAIMTFFGAMQAAILGLSTGSNLSTWVLKGKIQIITVLYSGIVGSSVCYVGMSWCVKKRGPVFTAAFSPLVQIMSGMIDISVLHEQLHLGSVVGSILVMIGLYILLWGKRKEMMQNGATKFAQEVEETKEQEPRV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2488 357 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 153 - -
Ssu5g2488 357 PANTHER WAT1-RELATED PROTEIN 9 352 - -
Ssu5g2488 357 Pfam EamA-like transporter family 24 150 IPR000620 GO:0016020|GO:0016021
Ssu5g2488 357 Pfam EamA-like transporter family 190 328 IPR000620 GO:0016020|GO:0016021
Ssu5g2488 357 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 333 - -
Ssu5g2488 357 PANTHER WAT1-RELATED PROTEIN 9 352 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2488 Ssu-Chr5 68510709 68513048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2488 7 262 Nodulin-like Gene Family AT3G30340 50.391 2.94e-88 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2488 - - gmx:100791663 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2488 5 68510709 68513048 Ssu1g0594 1 13193506 13196051 PCT