Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2484 ATGGATCAGGCAAGGAGCAAAGGCAGTGGTGAGATACTGGATCATGTCGATGAAAGGGTGGATGAGGATTTGAACCAATTGGTTGAAGGAAATGCAATTGATGCAGGGGCTGGACATACCTTGGGTGACAGAGACAGTGTAAGTGGGGAAGATGGGGCTtcagaagagatgtgcaatgaTCTTGGATTGAATAGGGAGTTAAAGGAGGGGCCTCAAGAAGTTAATGATCAGGAGATGGGTGACCcacaagaaattaatgatacATTGCACGGGGTTGATCAAGGAACTAGTTATAGTTCAAGAAATTTGGTTAGTGGGGAAGTACTTGAGACCTGTGTTGTGATGGATCCTTCTGCTCAGATTGAGAATTTCAATGGAGATAATAGGAAATTGGAAGCAAAACATAATGAATCAGGGTTGAGCAATGTGTCCATGAAAGAAACAAAAGGGGTGTCTGAGACAGACAAAAATTCATGTGTGATTGATATTAACCGTGGCAGCTGCGATGGGTTTAGTGAGAATTTGGAAGGTGAAATGATCTGTAGGATTTGCCATCTGGCCTCTGGGCAACCATTAGAAGCAGCAGTTGTTGGCACTGCAAATAGTGCTACCACTACTAATACAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCGCATAGTCATTGTGCTGAGGCATGGTTCAAGCTTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCAGATGTTACTGATAATGGATTTATCGAAGAGTGGAATGAAAATAGATTCATGGACAGTGATAATACCTCATCAGGCAGGTTTGGTCGATGCTGGCGCGGACAACCCTTTTGTAACTTCTTAATGGCATGCCTGGTAATAGCTTTTGTTCTACCATGGTTCTTTCGTGTAAATATGTTCTAG 936 0.4092 MDQARSKGSGEILDHVDERVDEDLNQLVEGNAIDAGAGHTLGDRDSVSGEDGASEEMCNDLGLNRELKEGPQEVNDQEMGDPQEINDTLHGVDQGTSYSSRNLVSGEVLETCVVMDPSAQIENFNGDNRKLEAKHNESGLSNVSMKETKGVSETDKNSCVIDINRGSCDGFSENLEGEMICRICHLASGQPLEAAVVGTANSATTTNTDLIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSDVTDNGFIEEWNENRFMDSDNTSSGRFGRCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2484 311 Pfam RING-variant domain 209 244 IPR011016 GO:0008270
Ssu5g2484 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 311 - -
Ssu5g2484 311 SMART ringv_2 180 245 IPR011016 GO:0008270
Ssu5g2484 311 MobiDBLite consensus disorder prediction 35 55 - -
Ssu5g2484 311 ProSiteProfiles Zinc finger RING-CH-type profile. 173 251 IPR011016 GO:0008270
Ssu5g2484 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 256 IPR013083 -
Ssu5g2484 311 MobiDBLite consensus disorder prediction 73 99 - -
Ssu5g2484 311 PANTHER ZINC FINGER, RING-CH-TYPE 1 311 - -
Ssu5g2484 311 SUPERFAMILY RING/U-box 178 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2484 Ssu-Chr5 68454187 68457208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2484 161 310 C3H Transcription Factor Family AT5G05830 38.065 5.64e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2484 - - gmx:100791129 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2484 5 68454187 68457208 Ssu5g2484 5 68454187 68457208 ECH
Ssu5g2484 5 68454187 68457208 Ssu1g0586 1 13053406 13055901 PCT