Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2483 ATGCCTCCAGAAGCAATTGATCTTGCTTCCCGGCTTCTGCAGTATTCCCCAAGTCTTCGATGTACTGCGCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCACTTGCCTGATGGTCGTCCATTTCCCCCTCTATTCAACTTTAAACAAGAGTTATCCGGAGCGTCTCCAGAGCTTGTTAATAAGTTGATACCTGACCACATGAAGCAGCAGAAAGGGCTACAATATGCCCATTTGGCTGGAACATGA 267 0.4719 MPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNAHLPDGRPFPPLFNFKQELSGASPELVNKLIPDHMKQQKGLQYAHLAGT 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2483 88 Gene3D Transferase(Phosphotransferase) domain 1 1 75 - -
Ssu5g2483 88 PANTHER BNAC07G50210D PROTEIN 1 81 - -
Ssu5g2483 88 SUPERFAMILY Protein kinase-like (PK-like) 2 56 IPR011009 -
Ssu5g2483 88 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2483 Ssu-Chr5 68427080 68427718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2483 3 70 MAP Kinase Gene Family AT2G43790 36.111 9.85e-06 40.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2483 K14502 - gmx:100810237 171.785