Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2482 ATGGGGAGCCAGTGGCCATTAAGAAGATTTTACAGGACAGAAAATgaactttttcttaatttggtgATGGAATATGTTCCAGAGTGTATGTATCGAATGTCAAAGTTCTATAGTAATACTAATCAGAGAATGCCACTTATCTATGTAAAACTTTACATGCACCAGATTTTCAGGGGGCTGGCTTATATCCACACTGTCCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGACCCTCTCACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGGTTAAAGGTGAAGCTAATATATCCCATATATGTTCACTTTATTATCGGGCACCGGAACTTATATTTGGTGCCACTGATTATACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTACTTTTGGGCCAGCCATTATTTCCTGGCGACAATGCAGTGGACCAGCTTGTAGAGATTATCAAGGTTCTAGGCACACCTGCTCGGGAGGAAGTTTGCTGTATGAATCCAAACTACAATGACTTGAAGTTTCCCCAGGTTAGAGCACCTCCATGGCACAAGGGTTGCATTTTCAGCTCTCTTCTGCCACTTGGTTTTTCAGATTATCAAAGTTGA 639 0.4038 MGSQWPLRRFYRTENELFLNLVMEYVPECMYRMSKFYSNTNQRMPLIYVKLYMHQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGEANISHICSLYYRAPELIFGATDYTTSIDIWSAGCVLAELLLGQPLFPGDNAVDQLVEIIKVLGTPAREEVCCMNPNYNDLKFPQVRAPPWHKGCIFSSLLPLGFSDYQS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2482 212 SUPERFAMILY Protein kinase-like (PK-like) 10 194 IPR011009 -
Ssu5g2482 212 Gene3D Transferase(Phosphotransferase) domain 1 28 208 - -
Ssu5g2482 212 PANTHER SHAGGY-RELATED PROTEIN KINASE ETA 10 199 - -
Ssu5g2482 212 CDD STKc_GSK3 10 204 IPR039192 -
Ssu5g2482 212 Pfam Protein kinase domain 10 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2482 212 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Ssu5g2482 212 ProSiteProfiles Protein kinase domain profile. 1 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2482 212 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 10 199 - -
Ssu5g2482 212 SMART serkin_6 7 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2482 Ssu-Chr5 68424140 68427012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2482 14 204 Core Cell Cycle Gene Families AT1G76540 38.542 2.37e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Ssu5g2482 Pkinase 9.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2482 K14502 - qsu:112026990 340.502