Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2478 ATGAAGCCCTTTTGCAGATTCTTGATTCTTCTATTGCTGTTTTCTCTGGCGGAATCTTCATGCAACAGTGAAGAGCTTGGCTGGGTGTCAAAGGCTTTCAAATCAGTCTCTGGCTTCAACGCTTCCTCATGGCTCCAAACAAACTGTTCACAAACTCATATCACCAGAATAGTCCTTCCATCCCAAAACCTAAGCGGCACGATTTCATGGAACTATCTGAGGAACATGTCCAACTTACAGGTTCTCGATCTCTCTGGGAATTCCCTGCAAGGGTACGTGCCGAGCTGGTTTTGGTCAAGGTCAACCTTATTGGAAATAAACCTCTCGAGAAACAGGTTCGGAGGGAGCATCATGACCCCCTCCTCCAAATCAGAAAACACCTCGTTTTCGATTTCATCCGTTCAAACGCTCAACCTCTCCCACAACAGGTTCACCAATTCAATCCAACTTTCTGGCTTCCGAAACCTTAAAATCCTCGACCTATCCCACAACCACCTGGTAACACTCCCCTCTGGGTTCCAAAACCTCACCAAGCTAGAACACCTCGACCTCTCAAGCTGCAATATCCAAGGCAACATAAAACCCATTTCTTCTGTTCACCCACTTCACTACTTGGACTTATCAAACAACACTCTCACCGGTAATTTCCCTTCCGATTTCCCTCCACTCAACACCCTCAAATTCCTTAACATCTCGTACAACAACTTCACCGCATCAATTAGCCTAAACAAGTTCAATAGATTCAACAAATCAGCTTTCATCCACGCTGGCACCAACTTCACCTACTACGACAACACCACGTCCAAAACGCCCTACAACAGCAAAAATTCAACAGAAGCCATCCACAACAAACAACACAAGCGAAAATCCAAAACGCTGATTCTTACAGTGTCGTCTGCATCAGCAGCACTCGTCCTAATTCTGTTGTCCATTTGGGTACTACGCATTATTATTCACAAGAGGAAGGAACGCGCCAAGAGGAACAAATGGGCGATTTCCATGCCGGTCCCACATGGGATGAGGGTGGTGGAGAAACTAGGGCCGTTCGCGTTCGAGACTGAATCCGGGTCAACGTGGGTGGCTGACCTGAAGGAACCGTCTTCCGCGCCGGTGGTGATGTTCGAGAAGCCGTTGATGAATCTGAGCTTCAAGGACCTCATTGTTGCCACGTCACACTTCGGGAAGGACTCGCTGCTCGCTAAGGGAAGGTGTGGGCCCGTGTACCGGGCCGTGCTGCCCGGGGACCTCCACGTGGCAATCAAGGTGCTCGAACACGCCAGGGACGTTGATCCTGATGACTCGGTCGCCACGTTCGTTGACCTCTCTAGGCTCAAGCACCCCAACTTGTTGCCCCTCTCAGGTTACTGCATTGCAGGTAACGAGAAACTGGTACTGTACGAGTACATGGCAAACGGCGACCTAGGAAGGTGGCTACACGAGCTTCCAACTGGGGACACCAACGTGGAGGACTGGACAGGAGACACGTGGGAGATTCAAAACGGCGTCGCCGACGGATCCCCAGAAAAGATGGGGTGGCTGACACGACACCGTATCGCGGTGGGCATAGCGCGTGGCCTCGCGTATCTTCACCACGCGGGTTCCAAGCCCGTGGTGCACGGCCACCTCGTCACCTCAAACATTCTTCTCGCCGACGATTTCGAGCCTCGGGTCTCCGATTTCGGGTTGCGACCCGACCCGACTCCGAACGGCGGCACGGAGGCTGACGTGTACTGCTTTGGGGCGGCGCTGATGGAGCTTCTGACGGGGAAGGAGAGCACGGCGGAGACGGTGGCGGCGGCGAGGAAGGCGGTGAGGGAGGGGCACGGCGTTAGGGTTTTGGACGAGAGGCTGCGACTCGGTGGCGACTCGGTGGTGAGTGAGATGGTGGAGACTCTCCGAGTTGCTTTTTTGTGTACGAACGAGTCGCCTTCTAAGAGGCCCACAATGCAGCAGGTTTTGGGTTTGCTCAAAGACATTCGTCCTCATCAGCAACAACTCGTCCCGAGTTGA 2010 0.5279 MKPFCRFLILLLLFSLAESSCNSEELGWVSKAFKSVSGFNASSWLQTNCSQTHITRIVLPSQNLSGTISWNYLRNMSNLQVLDLSGNSLQGYVPSWFWSRSTLLEINLSRNRFGGSIMTPSSKSENTSFSISSVQTLNLSHNRFTNSIQLSGFRNLKILDLSHNHLVTLPSGFQNLTKLEHLDLSSCNIQGNIKPISSVHPLHYLDLSNNTLTGNFPSDFPPLNTLKFLNISYNNFTASISLNKFNRFNKSAFIHAGTNFTYYDNTTSKTPYNSKNSTEAIHNKQHKRKSKTLILTVSSASAALVLILLSIWVLRIIIHKRKERAKRNKWAISMPVPHGMRVVEKLGPFAFETESGSTWVADLKEPSSAPVVMFEKPLMNLSFKDLIVATSHFGKDSLLAKGRCGPVYRAVLPGDLHVAIKVLEHARDVDPDDSVATFVDLSRLKHPNLLPLSGYCIAGNEKLVLYEYMANGDLGRWLHELPTGDTNVEDWTGDTWEIQNGVADGSPEKMGWLTRHRIAVGIARGLAYLHHAGSKPVVHGHLVTSNILLADDFEPRVSDFGLRPDPTPNGGTEADVYCFGAALMELLTGKESTAETVAAARKAVREGHGVRVLDERLRLGGDSVVSEMVETLRVAFLCTNESPSKRPTMQQVLGLLKDIRPHQQQLVPS 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2478 669 SMART LRR_typ_2 153 175 IPR003591 -
Ssu5g2478 669 SMART LRR_typ_2 76 99 IPR003591 -
Ssu5g2478 669 ProSiteProfiles Protein kinase domain profile. 393 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2478 669 Gene3D Ribonuclease Inhibitor 17 132 IPR032675 -
Ssu5g2478 669 Gene3D Ribonuclease Inhibitor 133 297 IPR032675 -
Ssu5g2478 669 PANTHER KINASE, PUTATIVE-RELATED 3 662 - -
Ssu5g2478 669 PRINTS Leucine-rich repeat signature 79 92 - -
Ssu5g2478 669 PRINTS Leucine-rich repeat signature 153 166 - -
Ssu5g2478 669 ProSiteProfiles Leucine-rich repeat profile. 155 177 IPR001611 GO:0005515
Ssu5g2478 669 SUPERFAMILY L domain-like 40 240 - -
Ssu5g2478 669 Pfam Leucine rich repeat 133 189 IPR001611 GO:0005515
Ssu5g2478 669 Pfam Leucine rich repeat 53 113 IPR001611 GO:0005515
Ssu5g2478 669 Gene3D Phosphorylase Kinase; domain 1 353 468 - -
Ssu5g2478 669 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 662 - -
Ssu5g2478 669 Gene3D Transferase(Phosphotransferase) domain 1 569 667 - -
Ssu5g2478 669 Pfam Protein tyrosine and serine/threonine kinase 397 563 IPR001245 GO:0004672|GO:0006468
Ssu5g2478 669 Gene3D Transferase(Phosphotransferase) domain 1 469 568 - -
Ssu5g2478 669 SUPERFAMILY Protein kinase-like (PK-like) 383 662 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2478 Ssu-Chr5 68366889 68370273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2478 54 659 Receptor kinase-like Gene Family AT5G07280 30.015 1.06e-68 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Ssu5g2478 PK_Tyr_Ser-Thr 4.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2478 - - gmx:100788556 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2478 5 68366889 68370273 Ssu5g2478 5 68366889 68370273 ECH
Ssu5g2478 5 68366889 68370273 Ssu1g0581 1 12993291 12995741 PCT