Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2475 atgtcaGATGGATATGAGAGGAGTGAGGAACAGGCTGATGACACTTCAATGGGATCATCCCAGAAATGCTCATCCTTTGATTTGAATGAAGAAGCTAGCAGTGAGGATAACAATGATAACGATGAGGGATGCGAGAAAGAAAAGGACGAAGGCACTTCAACTAACAAAAGTAGCAGCATaacaaaagaaggaaataatGAAGGAAGAGGTGGCGTGAGACAATATGTTAGATCAAAGATGCCTCGGCTTCGGTGGACTCCTGAACTTCATCTATCCTTTGTGCATGCTGTTGAAAGGCTCGGAGGCCAAGAGAGAGCAACACCCAAATTGGTGCTTCAGCTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGAAGCAAGAAACTCGACGAGGCTGGGCAAGTATTAAGTCAAACATACAAATCAACCCATGAACTTGGTCGCATTTCTCATGCAGTCCATCAGTCCATGAATGCTCGTCAACATTTCAAGATGGGAAATGGTGGAATTATTCTAGCAAGTGATTACAACGAGCACAGTTATTCCCATGGTCTCCTGCATCCCTCCTCCCTATCACATTCACATTCTAAAGCCATCGATTCAAGGCACCAACAATGGTACTTCAATAATCATCAACCTTTTAGAAGACCAAGTTACTTTAGCAACGAAGTTGTCTCCTCAACAGCCTTACAAACGCAAGGAAGATCAATATCTGCAAACCACATTCAACTAATGGATACTACCAGCATAGCACCCATGAGACCAAGCCAATTTCATGAAGAGAAAAGGTGGCCTCCATTAGAAATTATGAACACTCATCCCTGGAAGAAAAGGTTACCCGCCAATATTACTTCTAATACTGGGTCACAATCTGTTGTACATCAATTTGGCCCCACTCCAGCATCTCTTAGACCAAGTGAGTTGAACTTCGGAAATAACACAAGAATCAGGGAACATCTATCAAACTCCGACGAGCATCAGAACTATTCCGACAGTTTAAAGCTAGAATTTGAACCTCCATTTCGGATTAAGTTGAATCAAGAAAAATTGCAGAAAGACAAGCAATGGGTGCCTGATTTGCGACTGAGTTTAAGTCAGAGAGATGGCAACAATGATGGCAAGACTGATCATTGCAGAGAAACCCAAGAAATCAACACGAAACTTTCACTTTCATAG 1200 0.4175 MSDGYERSEEQADDTSMGSSQKCSSFDLNEEASSEDNNDNDEGCEKEKDEGTSTNKSSSITKEGNNEGRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSQTYKSTHELGRISHAVHQSMNARQHFKMGNGGIILASDYNEHSYSHGLLHPSSLSHSHSKAIDSRHQQWYFNNHQPFRRPSYFSNEVVSSTALQTQGRSISANHIQLMDTTSIAPMRPSQFHEEKRWPPLEIMNTHPWKKRLPANITSNTGSQSVVHQFGPTPASLRPSELNFGNNTRIREHLSNSDEHQNYSDSLKLEFEPPFRIKLNQEKLQKDKQWVPDLRLSLSQRDGNNDGKTDHCRETQEINTKLSLS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2475 399 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 399 - -
Ssu5g2475 399 MobiDBLite consensus disorder prediction 39 53 - -
Ssu5g2475 399 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 81 136 IPR006447 GO:0003677
Ssu5g2475 399 MobiDBLite consensus disorder prediction 14 31 - -
Ssu5g2475 399 MobiDBLite consensus disorder prediction 1 74 - -
Ssu5g2475 399 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 399 IPR044848 GO:0003700
Ssu5g2475 399 SUPERFAMILY Homeodomain-like 79 135 IPR009057 -
Ssu5g2475 399 Pfam Myb-like DNA-binding domain 83 133 IPR001005 -
Ssu5g2475 399 Gene3D - 80 137 - -
Ssu5g2475 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 137 IPR017930 -
Ssu5g2475 399 MobiDBLite consensus disorder prediction 371 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2475 Ssu-Chr5 68326656 68335578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2475 19 138 G2-like Transcription Factor Family AT2G42660 58.678 2.27e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu5g2475 Myb_DNA-binding 2.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2475 - - gmx:100808625 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2475 5 68326656 68335578 Ssu1g0576 1 12858484 12861347 PCT