Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2474 ATGGAAAGCATATGGGATCCATTTGGATTATGGCTCAGAATTTATGTTGGATTGATCTCTCTGTGGGGAACTCAACAGTGCTGGTCTATGAACGATGAAGGACTAGCCTTGTTGGAATTTCGGGCAAGAATAACTTCTGATCCTTTTGGTGCTCTGGCAAATTGGAATCCAAATGATTGCAACCCTTGCAAGTGGTTTGGTGTTTGTTGTGTTGATGGCAAAGTGCAAATGCTGGTCCTAGCTGAACTATCTTTGGAAGGGACATTGGCTCTTGAGCTCGGGAAACTTAGTCATCTAAAATCCCTTATATTATGCAAGAACAGTTTTTCTGGTACCATTCCCAAAGAACTTGGAGATCTAGACAAGTTGGAGTTATTGGATTTAAGGGAGAATAACTTGACTGGAAGTATCCCGGCAGAAATTGGCAGGATGTTGTTGTCAAAACAATTGATGGTTTGGGGCAATAAAATTGAAGGCAGTGATTCTCAAGAGCTCAGAAAGCTCAGATTGCCCTCTAACAACAGTTGTTCAACTCCTTTGACAGCTTTATCTTGTGGCAAGAACAGAAAGTTTGCACACCAtatacaacaacaacaatgtttGAAAAGTATGTGGCATGGAAATTTCGAGCAATGGAGCAAGGTGGGTTCATTTGTTATTCCACTTAAAGGAGCACTCAAAAACTACCTCAATGCTGTGGCACTGTCACTGTTCAAGCTAAGAAAGGGTACCCCGAATGCCTATGAAGAGAAATATTGTGACAATCTGACTAGTACTGATGAGTCAGAGATTGGCCAGAATGTATCAAATCTAGTCAATTCGGCACGTCGTAAGTTGCTTGATGAGTCCAGTAACCTTGCAGCTGCACCTTTCAGTGGTGGGCCTACTATACAGATCAGTTCTGTTCCAATTACCCAGAGCAGTGGAGCTTTCCCAGCTGTGCCAGTCgctaataagaaacaaaatcagTCACTTGCACCATTGCCTTCAACTTCTGATTCTCCACATGTGAATCAAACAAGTCAACAAAATTCATCTAATGGTGCTTCTGGAAAATTGTGgaagtatattattataatctCAGGTATTGCTGTCTTGGTCATTGTTGTTGTGATCATGCTTTGCATTTGGCAAAAACGAGCAGCAAAAGCAATAAAGCCCTGGAAGACAGGAATCAGTGGACAGTTGcagaaagcatttataacagGGGTCCCCAAGTTGAATCGAGTAGAGCTGGAGACAGCCTGTGAAGATTTCAGCAATATCATTAATAGTTTTGATGAATGCACCATATACAAAGGAACACTATCCAGTGGAGTTGAGATTGCTGTTGATTCTACTATTGTTACTTCTGTCCAAGATTGGTCAAAGAACATGGAGACAGCCTATCACAAAAAGATTGCTACATTGTCCCGTGTTAACCATAAGAACTTTACCAATCTTATTGGGTACTGTGATGAAGAAGAACCATTCACAAGGATGATGGTGTTTGAATATGCTCCTAATGGAAGCTTATTTGAGCATCTGCATGTTAAGGAAGTTGAACATCTTGACTGGAGCGCAAGGATGAGGGTTATTATGGGCACAGCTTATTGTCTTCAGTATATGCACCATGATCTGAATCCACCAGTAGCTCATTCCAACCTCAATTCAGTTGCTATATTATTAACAGATGACTTTGCTGCTAAGATATCAGAGATCTCTTTTGGAAAGAATGTTTTATCACCAGCCAACAAAAGTGGAGATCAATCACAGAAATCTGAGTTGCCACCCCAGGCTGATCCCGAAACGGATGTCTATAACTTTGGAGTATTGTTACTTGAAATCATTTCTGGGAAACTACCTTACTCTGAAGAACAAGGCTACCTTGTGAACTGGGCTGCTGAGCACTTGAATGATAAGCGAAACATCAGCCATCTGATCGATCCCACGCTGCAGTCCTTCAAAGACGAAGAACTTGATGTCATCTGTGAGGTGATCAAAGATTGTCTTCAATCTGATCCAAGGTTAAGACCAACAATGAAGGACATAAGTCCCAAATTGAAGGAAGTGCTTCGTGTATCACCTGAGCAAGCTGTCCCAAGACTTTCTCCACTCTGGTGGGCTGAGCTGGAGATCTTATCAGTGGAGGCCACTTGA 2139 0.4072 MESIWDPFGLWLRIYVGLISLWGTQQCWSMNDEGLALLEFRARITSDPFGALANWNPNDCNPCKWFGVCCVDGKVQMLVLAELSLEGTLALELGKLSHLKSLILCKNSFSGTIPKELGDLDKLELLDLRENNLTGSIPAEIGRMLLSKQLMVWGNKIEGSDSQELRKLRLPSNNSCSTPLTALSCGKNRKFAHHIQQQQCLKSMWHGNFEQWSKVGSFVIPLKGALKNYLNAVALSLFKLRKGTPNAYEEKYCDNLTSTDESEIGQNVSNLVNSARRKLLDESSNLAAAPFSGGPTIQISSVPITQSSGAFPAVPVANKKQNQSLAPLPSTSDSPHVNQTSQQNSSNGASGKLWKYIIIISGIAVLVIVVVIMLCIWQKRAAKAIKPWKTGISGQLQKAFITGVPKLNRVELETACEDFSNIINSFDECTIYKGTLSSGVEIAVDSTIVTSVQDWSKNMETAYHKKIATLSRVNHKNFTNLIGYCDEEEPFTRMMVFEYAPNGSLFEHLHVKEVEHLDWSARMRVIMGTAYCLQYMHHDLNPPVAHSNLNSVAILLTDDFAAKISEISFGKNVLSPANKSGDQSQKSELPPQADPETDVYNFGVLLLEIISGKLPYSEEQGYLVNWAAEHLNDKRNISHLIDPTLQSFKDEELDVICEVIKDCLQSDPRLRPTMKDISPKLKEVLRVSPEQAVPRLSPLWWAELEILSVEAT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2474 712 Gene3D Transferase(Phosphotransferase) domain 1 500 693 - -
Ssu5g2474 712 Pfam Protein tyrosine and serine/threonine kinase 431 681 IPR001245 GO:0004672|GO:0006468
Ssu5g2474 712 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Ssu5g2474 712 Gene3D Ribonuclease Inhibitor 29 213 IPR032675 -
Ssu5g2474 712 SUPERFAMILY Protein kinase-like (PK-like) 405 678 IPR011009 -
Ssu5g2474 712 Gene3D Phosphorylase Kinase; domain 1 394 499 - -
Ssu5g2474 712 SUPERFAMILY L domain-like 29 188 - -
Ssu5g2474 712 ProSiteProfiles Protein kinase domain profile. 417 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2474 712 PANTHER LRR RECEPTOR-LIKE KINASE 1 712 - -
Ssu5g2474 712 PANTHER PROTEIN MALE DISCOVERER 2 1 712 - -
Ssu5g2474 712 MobiDBLite consensus disorder prediction 322 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2474 Ssu-Chr5 68284451 68290513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2474 67 684 Receptor kinase-like Gene Family AT5G56040 25.710 2.29e-47 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Ssu5g2474 PK_Tyr_Ser-Thr 1.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2474 - - gmx:100808098 1153.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2474 5 68284451 68290513 Ssu5g2474 5 68284451 68290513 ECH
Ssu1g0578 1 12911485 12916507 Ssu5g2474 5 68284451 68290513 ECH