Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2473 ATGGCAAAGGTGGCTCCCAAGGATGGCAAATCCACCGCCGTTAGCAAGAAGGAAAACCCGAACCTTCTACTGGGCCGGTTCGAGCTCGGGAAGCTCCTGGGGCACGGAACCTTCGCGAAGGTCCACCACGCGCGGAACATCAAAACCGGGGAGGGAGTGGCCATCAAGATAATAAACAAGGACAAGATCCTCAAGGGCGGTTTGATGTCCCACATAAAGCGCGAGATCTCCGTCCTCCGCCGCGTCCGCCACCCCAACATCGTGCAGCTCTTCGAGGTCATGGCCACCAAGACCAAGATCTACTTCGTCATGGAGTACGTCCGCGGCGGCGAGCTCTTCAACAAGGTCGCCAAGGGAAGGCTCAAGGAGGAGGTCGCGAGAAAATACTTCCAACAGTTAATATCCGCGGTGGAGTTCTGCCACGCGCGAGGCGTGTTCCACCGGGACCTCAAGCCCGAGAACCTGTTGCTCGACGAGAGTGGGAGCCTTAAAGTCTCCGACTTCGGTCTCAGTGCCGTGTCGGATCAGATTAGGCAGGACGAGCTGTTCCACACGTTTTGTGGGACACCCGCGTATGTGGCTCCCGAGGTTTTGGCGCGGAAAGGGTACGATGGCGCCAAGGTTGATATTTGGTCTTGTGGGGTTGTCTTGTTTGTTTTGATGGCGGGGTACTTGCCTTTCCATGACCGTAACGTTATGGCCATGTATAAGAAGATTTACAAGGGCGAGTTTCGGTGTCCCAGGTGGTTCTCTCCTGAACTTATTCGGCTTCTCTCTAGGCTTCTTGACACTAACCCTCAGACCAGGATTTCTATTCCGGAAATCATGGAGAACCGCTGGttcaagaaaggtttcaagcaGATCAAGTTCTATGTGGAGGATGATAGAGTTTGCAGTTTTGATGATAAGCTGCaccatgatgatgatgatttagCAACATCAGATTCCGAGGTTGAGGTTAGGAGGAGGAATAgtaatagcaacaacaatgcTTCGTTGCCAAGACCTGCGAGTTTGAATGCGTTTGACATCATATCGTTCTCTCAGGGTTTCGATCTCTCTGGGTTGTTTGAGGAAAAGGGTGATGAGGCGAGGTTTGTGTCTGCTGCTCCAGTCTCTAAGATTATATCGAAGTTGGAGGAGGTTGCTCAGTTGGTTAGTTTCACCGTGAGGAAGAAAGACTGTAGGGTGAGCTTGGAGGGTTGTAGGGAAGGTGTGATGGGGCCTTTGACCATTGCTGCAGAGATTTTTGAGCTGACACCTtcgttggtggtggtggaggtgaagAAAAAGGGAGGGGATAAGGCAGAGTATGAGAAGTTTTGTAACTCTGAGTTGAGACCCGCGTTGGAGAATTTGGCGAGGGAGGAATCTGCTTCTTCTTCATGCCAATCTACACACGCTGAACCTGAATCCCATCAACGGGCACTTTCTGACTCTGCCCTTGACATACATTCAGATAATGAATGTTTGCACCAACAGAGGTTGAATCTAGCGGAAGGGACTAGTTTCTTGCAATATGATGATGAATCAAGGTTTGAATGTCCACCCGAAAATGTGCCCACATTTACCATCTCACCTTAG 1584 0.4848 MAKVAPKDGKSTAVSKKENPNLLLGRFELGKLLGHGTFAKVHHARNIKTGEGVAIKIINKDKILKGGLMSHIKREISVLRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVEFCHARGVFHRDLKPENLLLDESGSLKVSDFGLSAVSDQIRQDELFHTFCGTPAYVAPEVLARKGYDGAKVDIWSCGVVLFVLMAGYLPFHDRNVMAMYKKIYKGEFRCPRWFSPELIRLLSRLLDTNPQTRISIPEIMENRWFKKGFKQIKFYVEDDRVCSFDDKLHHDDDDLATSDSEVEVRRRNSNSNNNASLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVSAAPVSKIISKLEEVAQLVSFTVRKKDCRVSLEGCREGVMGPLTIAAEIFELTPSLVVVEVKKKGGDKAEYEKFCNSELRPALENLAREESASSSCQSTHAEPESHQRALSDSALDIHSDNECLHQQRLNLAEGTSFLQYDDESRFECPPENVPTFTISP 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2473 527 Pfam NAF domain 336 392 IPR004041 GO:0007165
Ssu5g2473 527 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Ssu5g2473 527 SUPERFAMILY Protein kinase-like (PK-like) 23 318 IPR011009 -
Ssu5g2473 527 Gene3D Kinase associated domain 1, KA1 337 455 - -
Ssu5g2473 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Ssu5g2473 527 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 21 459 - -
Ssu5g2473 527 ProSiteProfiles NAF domain profile. 334 358 IPR018451 GO:0007165
Ssu5g2473 527 ProSiteProfiles Protein kinase domain profile. 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2473 527 Pfam Protein kinase domain 28 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2473 527 SMART serkin_6 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2473 527 MobiDBLite consensus disorder prediction 457 478 - -
Ssu5g2473 527 CDD STKc_SnRK3 26 280 - -
Ssu5g2473 527 PANTHER - 21 459 - -
Ssu5g2473 527 MobiDBLite consensus disorder prediction 457 471 - -
Ssu5g2473 527 CDD CIPK_C 340 450 - -
Ssu5g2473 527 Gene3D Transferase(Phosphotransferase) domain 1 17 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2473 Ssu-Chr5 68276019 68277602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2473 4 457 CBL-interacting serine-threonine protein kinases AT4G18700 77.634 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu5g2473 Pkinase 1.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2473 - - gmx:100807567 858.596