Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2467 ATGGCTCAAGTACAAAGTGGTCAAGCCAGTGAGGGGATTAAGCTGTTTGGGACAACGATTACGTTGTATggtagagaaagaaaagaagataaaaagggGAGTGAAGATGGGACAGAGGAGAAGAGGCCTGATAAGATCATACCATGCCCAAGATGCAAGAGCATGGAAACCAAGTTCTGCTACTTCAACAACTACAACGTTAATCAGCCGAGGCATTTCTGCAAGGGCTGCCAGCGGTACTGGACGGCCGGCGGGGCCCTTCGCAACGTGCCGGTAGGAGCCGGCCGGCGAAAGGCCAAACCTCTTTGCCACAGTGCCGCTGGGTTTTCGGACGGTGGGTTTTCACCCACCGTCCAACCGTTTGGTTTGGAGGAGGGGTTGGTTTTGGACGGATGGCATGTATCCACCGTGGCTCGTGGTGATTTCCGGCAGCTTTTTCCATCTAAGAGGCGGAGGACGAGCTCAGGTGGTCAACGTCAACCTTCTCAGCAAGAAAGTCAAACAAAGTTTGTTATCATCCACGAAATCACAGAACATCCAAATAAGATGCAAACAAAGGAGGCTTGA 567 0.4938 MAQVQSGQASEGIKLFGTTITLYGRERKEDKKGSEDGTEEKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPLCHSAAGFSDGGFSPTVQPFGLEEGLVLDGWHVSTVARGDFRQLFPSKRRRTSSGGQRQPSQQESQTKFVIIHEITEHPNKMQTKEA 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2467 188 MobiDBLite consensus disorder prediction 149 169 - -
Ssu5g2467 188 Pfam Dof domain, zinc finger 45 100 IPR003851 GO:0003677|GO:0006355
Ssu5g2467 188 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Ssu5g2467 188 PANTHER CYCLIC DOF FACTOR 2 5 158 IPR045174 GO:0003700|GO:0006355
Ssu5g2467 188 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 5 158 - -
Ssu5g2467 188 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Ssu5g2467 188 MobiDBLite consensus disorder prediction 146 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2467 Ssu-Chr5 68092426 68093946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2467 8 158 C2C2-Dof Transcription Factor Family AT2G34140 56.287 1.16e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu5g2467 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2467 - - gmx:100527802 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2467 5 68092426 68093946 Ssu5g2467 5 68092426 68093946 ECH