Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2458 ATGGCTTCTCCTGGTGGAGCCTATTCATCCGGTTCCAGCTCTCTTCAAAACTCTGGCTCCGAGGGAGACAGAGACATCGTGGAgcagaggaagaggaagagaatgcTGTCCAATAGGGAATCGGCACGTAGATCGAGGATGAGGAAGCAACAGCACCTAGAAGGTCTGAGTACCCAATTGGATCAGCTCAAAAACGAGAACAACCAAATCAACACGAACATAGGCATCACCACGCAGTTGTACCTCAACGTGGAGGCTGAGAACGCGATTCTGAGGGCGCAGATGGCGGAACTCAGCAACAGATTAAACTCGCTCAAcgaaattatcaatttcattaaCTCCACCAACTACTTGCTGTTTGATGAGGCACAGGATACTACTCAGTTCAATGATTGTGGCTTCGTGGAGGCTTGGAACTCCGTGCCTATCAACCAACCAATCGTGGCCTCCGCTGACGTGTTCATGTATTGA 471 0.4586 MASPGGAYSSGSSSLQNSGSEGDRDIVEQRKRKRMLSNRESARRSRMRKQQHLEGLSTQLDQLKNENNQINTNIGITTQLYLNVEAENAILRAQMAELSNRLNSLNEIINFINSTNYLLFDEAQDTTQFNDCGFVEAWNSVPINQPIVASADVFMY 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2458 156 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Ssu5g2458 156 SUPERFAMILY Leucine zipper domain 30 83 IPR046347 GO:0003700|GO:0006355
Ssu5g2458 156 MobiDBLite consensus disorder prediction 23 51 - -
Ssu5g2458 156 Coils Coil 46 73 - -
Ssu5g2458 156 MobiDBLite consensus disorder prediction 1 58 - -
Ssu5g2458 156 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 74 IPR004827 GO:0003700|GO:0006355
Ssu5g2458 156 PANTHER BZIP TRANSCRIPTION FACTOR BZIP124 1 155 - -
Ssu5g2458 156 Coils Coil 81 115 - -
Ssu5g2458 156 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
Ssu5g2458 156 Pfam bZIP transcription factor 29 74 IPR004827 GO:0003700|GO:0006355
Ssu5g2458 156 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 155 - -
Ssu5g2458 156 MobiDBLite consensus disorder prediction 1 22 - -
Ssu5g2458 156 Gene3D - 28 82 - -
Ssu5g2458 156 CDD bZIP_plant_GBF1 31 81 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2458 Ssu-Chr5 67982000 67982470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2458 26 156 bZIP Transcription Factor Family AT4G34590 50.694 3.60e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu5g2458 bZIP_1 2.9e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2458 K25786 - gmx:778139 215.312