Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2457 ATGGGCTTGGAGAGAATAGGTTCTAAAACGAGACAAGGTGACATCAAAAGATCAAAACCCAGATGTAGAAATAACAAGGAAATGGCAACTTTAGTTGAACCCCCCAACAGAATTAAGCCAAAGGGGAAGCATTATTATACAATATGGCAAACATTGTTCGAAATTGATACGAAGTATGTTCCAATCAGACCTATTGGCCGAGGAGCATATGGTGTAGTGTGCTCTTCCATCAATAGGGAGACCAATGAGAGAGTTGCAATTAAGAAGATTGGTAATATATTTGAGAATTCTATTGATGCATTGAGAACTTTAAGGGAGCTGAAGCTGCTTAGACATATTCGGCATGAGAATGTCATTGCTTTGAAGGATGTTATGATGCCAATCCATAGACCAAGTTTTAAGGATGTCTACTTGGTCTATGAACTCATGGATACAGATCTTCATCAAATTATTAAGTCCTCTCAGCCACTTTCCAGTGATCATTGCAAATATTTCTTGTTTCAGCTCCTTCGAGGTCTTAAATATCTTCATTCTGCAAATATTCTTCACCGGGACTTGAAGCCTGGGAATCTGCTCATCAATGCCAATTGCGATTTGAAGATATGTGACTTTGGGCTTGCACGAACTAATGGAGTTGATGGCCAGTTTATGACAGAGTATGTTGTCACTCGCTGGTATCGTGCACCAGAGCTCTTGTTGTACTGTGACAATTATGGAACCTCTATTGATGTCTGGTCAGTGGGGTGCATTTTTGCTGAGATTCTTGGTAGAAAGCCAATCTTCCCTGGAACTGAGTGTCTCAACCAGCTGAAACTAATTATAAGCGTTCTTGGAAGCCAGCATGAATCTCATCTTGAGTTTATTGATAATTCAAAAGCCAGGAGGTTTATCAAATCACTGCCCTTTACTAGGGGCAGACACTTCTCTCAGCTATATCCACAAGCAGATCCATTAGCCATAGATTTGTTGCAAAAAATGCTTGTATTTGATCCAACCAAGAGAATTACTGTCTTAGAAGCTCTCCAACACCCATATATGGCTGGCTTATATGATCCAAGGTGCAACCCTCCAGCTCAGGTTCCCATCAGTCTTGACATAGATGAAAACTGGGGAGAACAGACGATTAGGGAAATGATGTGGAATGAGATGCTACATTTTCATCCTGAAGTTGCTTCTGCCAATGCATAG 1188 0.4074 MGLERIGSKTRQGDIKRSKPRCRNNKEMATLVEPPNRIKPKGKHYYTIWQTLFEIDTKYVPIRPIGRGAYGVVCSSINRETNERVAIKKIGNIFENSIDALRTLRELKLLRHIRHENVIALKDVMMPIHRPSFKDVYLVYELMDTDLHQIIKSSQPLSSDHCKYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTNGVDGQFMTEYVVTRWYRAPELLLYCDNYGTSIDVWSVGCIFAEILGRKPIFPGTECLNQLKLIISVLGSQHESHLEFIDNSKARRFIKSLPFTRGRHFSQLYPQADPLAIDLLQKMLVFDPTKRITVLEALQHPYMAGLYDPRCNPPAQVPISLDIDENWGEQTIREMMWNEMLHFHPEVASANA 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2457 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Ssu5g2457 395 ProSitePatterns MAP kinase signature. 94 197 IPR003527 GO:0004707|GO:0005524|GO:0006468
Ssu5g2457 395 ProSiteProfiles Protein kinase domain profile. 59 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2457 395 SMART serkin_6 59 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2457 395 Gene3D Phosphorylase Kinase; domain 1 46 382 - -
Ssu5g2457 395 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 29 390 - -
Ssu5g2457 395 MobiDBLite consensus disorder prediction 1 23 - -
Ssu5g2457 395 Pfam Protein kinase domain 60 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2457 395 SUPERFAMILY Protein kinase-like (PK-like) 51 352 IPR011009 -
Ssu5g2457 395 ProSitePatterns Protein kinases ATP-binding region signature. 65 89 IPR017441 GO:0005524
Ssu5g2457 395 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 29 390 - -
Ssu5g2457 395 MobiDBLite consensus disorder prediction 9 23 - -
Ssu5g2457 395 CDD STKc_TEY_MAPK 53 388 - -
Ssu5g2457 395 Gene3D Transferase(Phosphotransferase) domain 1 143 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2457 Ssu-Chr5 67955451 67958368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2457 28 395 MAP Kinase Gene Family AT2G18170 84.511 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Ssu5g2457 Pkinase 1.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2457 K20537 - gmx:100783422 729.554