Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2455 atgGCTAACTTGATTGCACTTAGATTAACGGGTATGGAATATCAAAACCAAAAGGACAGATTCTGTGAGAAACTCAAGATCAAGAATAAGCCCAAGTTTGTTGGGGTGAGACAAAGGGCTTCTGGGAAATGGGCAGCAGAGATCAAAGACACATCGAAGAAGATTAGGGTGTGGCTTGGTACTTACCAAACTTGCTGA 198 0.4192 MANLIALRLTGMEYQNQKDRFCEKLKIKNKPKFVGVRQRASGKWAAEIKDTSKKIRVWLGTYQTC 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2455 65 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 17 64 - -
Ssu5g2455 65 CDD AP2 31 64 IPR001471 GO:0003700|GO:0006355
Ssu5g2455 65 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 64 - -
Ssu5g2455 65 ProSiteProfiles AP2/ERF domain profile. 32 65 IPR001471 GO:0003700|GO:0006355
Ssu5g2455 65 SMART rav1_2 32 64 IPR001471 GO:0003700|GO:0006355
Ssu5g2455 65 Pfam AP2 domain 31 63 IPR001471 GO:0003700|GO:0006355
Ssu5g2455 65 Gene3D AP2/ERF domain 32 65 IPR036955 GO:0003700|GO:0006355
Ssu5g2455 65 SUPERFAMILY DNA-binding domain 32 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2455 Ssu-Chr5 67918889 67919086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2455 12 64 AP2-EREBP Transcription Factor Family AT5G19790 58.491 2.65e-17 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu5g2455 AP2 5e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2455 K09286 - gmx:100809046 102.834