Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2438 ATGGATTTCCAAGTGGTTGTTCTCGGCGGTGGCGTCTCCAAGAAGCTCGTCCCCCTCGTTTCACAGGAGCTTCCAAACGCGTTACTTCCGGTGGCGAATCGCCCCGTTCTCTCTTACGTTCTGGAGTACTTGGAGCTTAGCAACCTTAAAGATCTCATTGTGGTGGTTGAAGGCGAAGAAGCGGCTCTTCATGTCGGGGCTTGGATTTCAGGGGCTTATGCTGATCGCCTTCACGTTGAGGTTGCTGCAGTTCCTGAGGATGTGGGGACAGCAGGTGCAATTCGGGCCATTTCGCATCACCTAACTGCCAAAGACATTTTGGTTGTCAGTGGTGATCTTGTTACCGATGTGCCACTTGGTGCTGTTGCAGCCACTCATAGACGGCACGATGCATTTGTCACTGCTATGCTTTGCTCTGCTCCTGTAAGTGGACATTCGGAGTCAGTATCCTCTGGTGGGAAGGACAAGGCCAAGAAACCTGGCCGATATGATTTAATAGGGCTGGATCCCACAAAACAGTTTTTAGTTCACATAGCAACTGGAGCAGAAGTTGAAAAAGATCTTCGAATTCAGAAGAGCATGCTCCCTGCAGTTGGCcagATAGAAATAAGAGCTGATCTAATGGACGCTCACTTGTATGCATTCAAAAGATCAGTTCTACAAGAAGTTCTAGATCAGAAGAGTGCATTTCATAGCTTAAAGCATGATGTCTTGCCATATCTTGTCCGGAGCCAACTGAAATCAGAAGTATTACTAAATGGTATGCCACAAGCAGAAGAAAATGGAACCGAAAGGGTTATTTCTCAAAGCAATCAACAAATGCTATCTCAAATACTTGCTAATGCATCTAAACCAACCTTTCATCTATGGCATGCACTGGGTCCTTATGGTTCTACCTCTGTTCGAAGAACCCATAAATGCTGTGCGTATATTGCTGGAAGCAACAAGTACTGTGCTCGCTTAAATTCTATACAAGCATACAGTGACATAAACCGAGATGTGATAGGAGAGGCTAGTCATTTATCAGGGTATTCCTTCTCTTCTCAAAACAACATCATCCATCCTTCTGCAGAGCTTGGGGCTAAAACAACTGTTGGGCCACATTGTATGCTGGGGGAAGGTTCACAGATGGGTGACAAATGCAGTGTGAAACGGTCTGTCATAGGTCGTCACTGTCGGATAGGCGCCAGTGTTAAGGTTGTTAATTCCGTAGTTATGAATCATGTTACTATTGGAGACTCTTGTTCAATCCAAGGTTCTGTTATCTGCAGCAATGTACAGCTGCAAGAACGCGCTGTACTAAAAGATTGCCAAGTTGGAGCAGGTTTTGTGGTAGCTGCTGGTAGTGAGTGCAAAGGGGAGGTCTTGGCTAAGAAATGA 1380 0.4572 MDFQVVVLGGGVSKKLVPLVSQELPNALLPVANRPVLSYVLEYLELSNLKDLIVVVEGEEAALHVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAISHHLTAKDILVVSGDLVTDVPLGAVAATHRRHDAFVTAMLCSAPVSGHSESVSSGGKDKAKKPGRYDLIGLDPTKQFLVHIATGAEVEKDLRIQKSMLPAVGQIEIRADLMDAHLYAFKRSVLQEVLDQKSAFHSLKHDVLPYLVRSQLKSEVLLNGMPQAEENGTERVISQSNQQMLSQILANASKPTFHLWHALGPYGSTSVRRTHKCCAYIAGSNKYCARLNSIQAYSDINRDVIGEASHLSGYSFSSQNNIIHPSAELGAKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGASVKVVNSVVMNHVTIGDSCSIQGSVICSNVQLQERAVLKDCQVGAGFVVAAGSECKGEVLAKK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2438 459 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 348 IPR029044 -
Ssu5g2438 459 Pfam Nucleotidyl transferase 6 143 IPR005835 GO:0009058|GO:0016779
Ssu5g2438 459 Gene3D Hexapeptide repeat proteins 349 457 - -
Ssu5g2438 459 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA 1 459 - -
Ssu5g2438 459 CDD LbH_eIF2B_gamma_C 370 450 - -
Ssu5g2438 459 SUPERFAMILY Nucleotide-diphospho-sugar transferases 4 425 IPR029044 -
Ssu5g2438 459 CDD eIF-2B_gamma_N 3 220 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2438 3 450 Eukaryotic Initiation Factors Gene Family AT2G34970 21.488 2.47e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2438 K03241 - gmx:100799460 837.025