Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2428 ATGCGAACTTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGAAAATGCAGCAGGTCCCGGTTCTTCTGCTAACAATGTGGGAACTGGTAGCACTGGTAGCACTTTAGCTCCTTCGCGACCTGTGTATGTTCCTCCCCATCTGAGGAACCGCCAGCCATCAGCAGAATCCCCTGCTCCAGCATATAGTGGCCCATCTTCTGGTTCTGGTTCTAGTTCTGGTGCTGGTAATTCTGGATCACGTTGGGCTGCACCCAGAAATGATTATCGTTCTGGGTATGGTGGTGGTGGACGCACAGGTGGATGGGGAAACAAAAGTGGTGGGTGGGATCGTGGGAGGGAGCGGGAAGTCAATCCCTTTGGAGATGAGGATAATGCTGAAGAGGCATTTAGTGAGCCTGAGAATACAGGAATAAATTTTGATGCCTATGAAGACATTCCAGTGGAGACCAGTGGTGAAAATGTGCCCCCGCCTGTGAATACATTTGCAGAGATTGACTTGGGTGAAGCACTTAATCAGAATATACGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCAATATCCCTAGCTGGACGGGATTTGATGGCCTGTGCGCAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCGATTATCAGTGGAATTATGAGGGGCCAACCTGTGCAGAGGCCACCTCGTGGGGTGCGTACAGTGTATCCTCTTGCACTTGTTCTTTCTCCAACTAGGGAGCTATCAATGCAAATACATGAAGAGGCTAGGAAGTTTTCATACCAAACTGGGGTTAGGGTGGTTGTTGCTTATGGAGGAGCACCAATAAACCAGCAgCTGCGGGATCTTGAAAGAGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCCTTAGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCGCAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCGCCAGGTGTCAGACAGACTATGTTGTTCAGTGCAACATTTCCGAAAGAGATACAGAGATTGGCTTCTGATTTCCTTTCAAGTTATATTTTCCTGGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTATCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGACCTTCTTCATGCACAAAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCGCTGGAACACTGGTTGTGTATTAACGGTTTTCCTGCAACTACTATTCATGGTGACAGGTCACAGCAGGTTAGTGTATTGCACAAATATTAA 1395 0.4688 MRTSWADLAANSAAENAAGPGSSANNVGTGSTGSTLAPSRPVYVPPHLRNRQPSAESPAPAYSGPSSGSGSSSGAGNSGSRWAAPRNDYRSGYGGGGRTGGWGNKSGGWDRGREREVNPFGDEDNAEEAFSEPENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIIQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCINGFPATTIHGDRSQQVSVLHKY 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2428 464 MobiDBLite consensus disorder prediction 1 121 - -
Ssu5g2428 464 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 53 457 - -
Ssu5g2428 464 Pfam DEAD/DEAH box helicase 184 365 IPR011545 GO:0003676|GO:0005524
Ssu5g2428 464 Gene3D - 379 461 IPR027417 -
Ssu5g2428 464 MobiDBLite consensus disorder prediction 56 80 - -
Ssu5g2428 464 MobiDBLite consensus disorder prediction 1 38 - -
Ssu5g2428 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 378 IPR027417 -
Ssu5g2428 464 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 191 376 IPR014001 -
Ssu5g2428 464 SMART ultradead3 179 391 IPR014001 -
Ssu5g2428 464 CDD DEADc_DDX3_DDX4 161 382 IPR044763 GO:0003724|GO:0005524
Ssu5g2428 464 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 160 188 IPR014014 GO:0003724
Ssu5g2428 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 457 IPR027417 -
Ssu5g2428 464 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 53 457 - -
Ssu5g2428 464 Gene3D - 116 378 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2428 Ssu-Chr5 67494614 67500962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2428 158 457 Eukaryotic Initiation Factors Gene Family AT3G19760 29.900 1.15e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2428 K11594 - gmx:100795756 779.63