Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2422 ATGCAGCACATCTCTGTTAAGCCTTTGGGTGATAGAGTACTGGTAAAAATTAAGGATGCAGAGGAAAAGACTAACGATGGGATTTTACTACCAGCGACTGCTCAAAGCAAGCCCCAAAGGGGTGAAGTGGTTGTTGCTGGGGACGGGAAGTCAGTCAGGAAGAACAAAGTGGACATTAGTGTGAAGATAGGTGCACAAGTTGTGTATTCAAAGTATGCTGGGAACTTGAAGTACAAGTGGAACTAA 246 0.4431 MQHISVKPLGDRVLVKIKDAEEKTNDGILLPATAQSKPQRGEVVVAGDGKSVRKNKVDISVKIGAQVVYSKYAGNLKYKWN 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2422 81 SUPERFAMILY GroES-like 4 75 IPR011032 -
Ssu5g2422 81 SMART Cpn10_2 5 81 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu5g2422 81 CDD cpn10 5 75 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu5g2422 81 Pfam Chaperonin 10 Kd subunit 6 75 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu5g2422 81 PRINTS 10kDa chaperonin signature 28 49 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu5g2422 81 PRINTS 10kDa chaperonin signature 62 74 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu5g2422 81 PRINTS 10kDa chaperonin signature 6 21 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu5g2422 81 PANTHER 10 KDA HEAT SHOCK PROTEIN 2 75 IPR020818 GO:0005524|GO:0006457|GO:0140662
Ssu5g2422 81 PANTHER GROES CHAPERONIN 2 75 - -
Ssu5g2422 81 Gene3D GroES chaperonin 2 81 IPR037124 GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2422 Ssu-Chr5 67417414 67417797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2422 2 75 Calmodulin-binding Proteins AT5G20720 68.919 2.50e-32 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2422 K04078 - gmx:100804915 117.087