Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2420 ATGGCGGGCGTTTCTCTCAAGTGCGGTGACTGTGGGGCTCTGTTGAGGTCCGTAGAAGAAGCCCAAGAGCACGCGGATCTCACTTCCCACTCCAACTTCTCCGAATCCACCGAACGCGTTCTCAACCTCGTTTGCACCGCTTGCTCCAAACCCTGCCGATCCAAAACCGAGAGTGATTTGCACACCAAGAGAACCGGCCACACCGAGTTCGTTGACAAGACTTCCGAGGCGGTGAAGCCGATAAGTTTGGAGGCTCCAAAGGTGGATGCAACTGCTTCGTCGGAAAACCCTTCCGCTGCTGCATCTACTGACCAAAATGAAgAAATGGTTGTTCCCGAAGTGGACAAAAAGCTGCTCGAGGAACTTGAATCAATGGGTTTTTCAACGGCACGAGCAACTCGGGCACTTCATTACTCTGGTAATGCTGGCCTTGAGGCTGCTGTAAATTGGATAGTAGAGCATGAGAATGATGCTGACATAGATCAGATGCCCTTgGTACCTGCCAACACCAAAATTGAGGCTCCTAAACCTTCTCTTACGCCAGAAGAACTGAAGGCCAGACAACAAGAACTAAGGGAGAGAGCTCgcaagaagaaagaagaggaagagaagagaatggagatagaaagagaaaagGAGAGAATTCGCATTGGCAAGGAGTTGCTGGAAGCAAAGAGGGTTGAAGAAGAGAATGAGAGGAAACGGTTGTTGGCCTTGAGAAAAGcagagaaagaggaagagaaaagggCTAGGGAGAAAATCAAGCAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGGCGGAGACTTGGATTGCCTCCAGAGGAACCTTCAGCAGCCAAACCTTCACCCATTGTGGAGGAGAAAAAGAGTTTTGTGCCCGTTAGGCCTGCCACAAAGGCTGAGCAAATGAGAGAGTGCCTCCGTTCTCTCAAGCAGAACCACAAGGAGGATGACGCCAAAGTAAAGAGAGCATTCCAAACTCTTTTAACTTATGTAGGGAATGTTGCCAGAAATCCCGATGAGGAAAAATTCAGGAAGATACGTCTTAGTAACCAAACTTTTCAGGAAAGAGTTGGTTCCTTGAAAGGGGGCATTGAATTTCTAGAAATTTGCGGGTTTGAGAAGATCGATGGTggtgagtttttatttttgcctaGGCACAAAGTTGAGATGGCGGTCCTGAATTCAGCTGGATCTGAATTAGACTCTGCAATAAAGAATCCCTTTTTTGGAGTTCTTTAG 1242 0.4428 MAGVSLKCGDCGALLRSVEEAQEHADLTSHSNFSESTERVLNLVCTACSKPCRSKTESDLHTKRTGHTEFVDKTSEAVKPISLEAPKVDATASSENPSAAASTDQNEEMVVPEVDKKLLEELESMGFSTARATRALHYSGNAGLEAAVNWIVEHENDADIDQMPLVPANTKIEAPKPSLTPEELKARQQELRERARKKKEEEEKRMEIEREKERIRIGKELLEAKRVEEENERKRLLALRKAEKEEEKRAREKIKQKLEEDKAERRRRLGLPPEEPSAAKPSPIVEEKKSFVPVRPATKAEQMRECLRSLKQNHKEDDAKVKRAFQTLLTYVGNVARNPDEEKFRKIRLSNQTFQERVGSLKGGIEFLEICGFEKIDGGEFLFLPRHKVEMAVLNSAGSELDSAIKNPFFGVL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2420 413 MobiDBLite consensus disorder prediction 85 109 - -
Ssu5g2420 413 Gene3D - 305 403 - -
Ssu5g2420 413 CDD UBA_PUB_plant 113 161 - -
Ssu5g2420 413 SUPERFAMILY PUG domain-like 294 409 IPR036339 -
Ssu5g2420 413 MobiDBLite consensus disorder prediction 172 208 - -
Ssu5g2420 413 Coils Coil 184 264 - -
Ssu5g2420 413 MobiDBLite consensus disorder prediction 242 273 - -
Ssu5g2420 413 MobiDBLite consensus disorder prediction 178 208 - -
Ssu5g2420 413 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Ssu5g2420 413 PANTHER F13M7.16 PROTEIN 1 413 - -
Ssu5g2420 413 Pfam PUB domain 320 390 IPR018997 -
Ssu5g2420 413 MobiDBLite consensus disorder prediction 242 297 - -
Ssu5g2420 413 Gene3D - 115 161 - -
Ssu5g2420 413 SMART PGNneu 323 386 - -
Ssu5g2420 413 Pfam UBA/TS-N domain 119 151 IPR015940 -
Ssu5g2420 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 113 154 IPR015940 -
Ssu5g2420 413 SUPERFAMILY UBA-like 101 167 IPR009060 GO:0005515
Ssu5g2420 413 SMART uba_6 115 153 IPR015940 -
Ssu5g2420 413 CDD PUB_UBA_plant 307 413 - -
Ssu5g2420 413 PANTHER F13M7.16 PROTEIN 1 413 - -
Ssu5g2420 413 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2420 Ssu-Chr5 67377932 67385788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2420 98 413 C2H2 Transcription Factor Family AT1G04850 78.997 2.67e-153 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2420 K24348 - gmx:100794687 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2420 5 67377932 67385788 Ssu5g2420 5 67377932 67385788 ECH