Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2404 ATGCGCTGTTACGGCCTAACCATACCGGGAAGCGACCACCATCGCTTCTGCGTCCCCACCGTATCCCCGATGTTCCCGAGGCCCAGCAGGCCCATCACCCGGATCGCGTTTCCGAGGGCGACCCTGAAGGAGGGTTTCGTGGTGGAGCTGAGCTTCTACGAGCTTCTGGGCATTCCGGAATCGGGCTCGCTCACGGAGATCAAGAACGCGTACAAGCAGCTCGCCCGGAAGTACCACCCGGACGTGTCGCCGCCGGACCGGGTCGAGGAGTACACCAAGAGGTTTATCCAGGTGCAGGAGGCCTACGAAACCTTGTCTGACCCCTCCAGAAAGGCCATGTACGATAGCGACATGGCCAAGGGCATTAACTTCGCCTTCAGCGCGCGGAGACGCTACAACTACCACGATCAGGTGGTTGAACAAAAAAGTGAATGGAAAGCTCGGTGGCAAACTCAACTGTCAGAGCTGAAGAGAAGAAGTAACAGCAAGGATGCTGGAGGGAATATGTCATGGGCAGCTCGAATGCGCCAGCAGAGGGATGAATTGTCAAATGAATCATGA 561 0.5686 MRCYGLTIPGSDHHRFCVPTVSPMFPRPSRPITRIAFPRATLKEGFVVELSFYELLGIPESGSLTEIKNAYKQLARKYHPDVSPPDRVEEYTKRFIQVQEAYETLSDPSRKAMYDSDMAKGINFAFSARRRYNYHDQVVEQKSEWKARWQTQLSELKRRSNSKDAGGNMSWAARMRQQRDELSNES 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2404 186 ProSitePatterns Nt-dnaJ domain signature. 95 114 IPR018253 -
Ssu5g2404 186 Gene3D DnaJ domain 40 157 IPR036869 -
Ssu5g2404 186 SUPERFAMILY Chaperone J-domain 51 124 IPR036869 -
Ssu5g2404 186 CDD DnaJ 52 107 IPR001623 -
Ssu5g2404 186 Pfam DnaJ domain 52 115 IPR001623 -
Ssu5g2404 186 PRINTS DnaJ domain signature 53 71 IPR001623 -
Ssu5g2404 186 PRINTS DnaJ domain signature 71 86 IPR001623 -
Ssu5g2404 186 PRINTS DnaJ domain signature 90 110 IPR001623 -
Ssu5g2404 186 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 48 183 - -
Ssu5g2404 186 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 48 183 - -
Ssu5g2404 186 MobiDBLite consensus disorder prediction 156 186 - -
Ssu5g2404 186 ProSiteProfiles dnaJ domain profile. 51 118 IPR001623 -
Ssu5g2404 186 SMART dnaj_3 50 110 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2404 Ssu-Chr5 67057362 67060558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2404 53 116 C2H2 Transcription Factor Family AT1G74250 43.284 1.01e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2404 - - gmx:100101903 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2404 5 67057362 67060558 Ssu5g2404 5 67057362 67060558 ECH