Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2400 ATGTTTGTGGGTGGGACTGCTGCACCGACAGCAGTTACAGTATGGGCAATGTCAGAACTCATGAAAAATCCTAAGGTTATGGAAAAGACACAGATTGAGGTAAGAAAGGTCTTTGATATTAAAGGTTATGTAGATGAAACAGACCTTGGAAAGTGTCAATATTTAAACTCAGTCATAAAAGAAACCATGAGGCTACATCCCCCTGAAGCATTATTAGTTCCAAGAGAAAACAGTGAGGCGTGTCTAATCAATGGATATCAAATACCTGCAAAGAGCAAAGTCATTATCAATGCTTGGGCCATTGGAAGAGATTCAAAGTATTGGAATGAAGCAGAGAAATTTGTGCCAGAGAGATTTCTAGATAACTCCTTTGACTTCAGCGGCACAAACTTTGAGTACATCCCCTTTGGGGCTGGAAGGAGAATATGTCCAGGAGCCGCATTTTCCATGCGTAACATGTTGCTGTCACTGGCCAATTTGCTTTACCATTTTGATTGGGAGCTGCCAAATGGAGCAAACCACCAAGAATTGGACATGACCGAGTCTTTTGGTCTTACGGTTAAAAAAGCAAATGATCTGTGCTTAATGCCCATTCCTTATCACCCCTCCGCACTGAGCCATCAGTAA 627 0.4195 MFVGGTAAPTAVTVWAMSELMKNPKVMEKTQIEVRKVFDIKGYVDETDLGKCQYLNSVIKETMRLHPPEALLVPRENSEACLINGYQIPAKSKVIINAWAIGRDSKYWNEAEKFVPERFLDNSFDFSGTNFEYIPFGAGRRICPGAAFSMRNMLLSLANLLYHFDWELPNGANHQELDMTESFGLTVKKANDLCLMPIPYHPSALSHQ 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2400 208 Gene3D Cytochrome P450 1 196 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2400 208 PRINTS E-class P450 group I signature 56 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2400 208 PRINTS E-class P450 group I signature 97 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2400 208 PRINTS E-class P450 group I signature 133 143 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2400 208 PRINTS E-class P450 group I signature 143 166 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2400 208 PRINTS E-class P450 group I signature 13 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2400 208 PANTHER CYTOCHROME P450 71B11-RELATED 1 200 - -
Ssu5g2400 208 Pfam Cytochrome P450 1 189 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2400 208 SUPERFAMILY Cytochrome P450 1 198 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2400 208 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 136 145 IPR017972 GO:0005506|GO:0016705
Ssu5g2400 208 PANTHER CYTOCHROME P450 71D10 1 200 - -
Ssu5g2400 208 PRINTS P450 superfamily signature 57 68 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2400 208 PRINTS P450 superfamily signature 4 21 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2400 208 PRINTS P450 superfamily signature 134 143 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g2400 208 PRINTS P450 superfamily signature 143 154 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2400 Ssu-Chr5 67006307 67006933 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2400 1 195 Cytochrome P450 AT1G33730 48.731 1.64e-65 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2400 - - gmx:100779120 374.4