Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2388 atGGATTCATGTTTATCGCGAAGAGCAACAACTGCTGAGAGCTCGAAACTGCACTCTTTGGAGCCAAGTAGTGAAGAAGGTGATAGTCATATATCCTGCCAACTAAATCTAACTCTGGCATCTTGTCCATTGCAAGTCAACAGAAATTCATACTCAGCCAGATCACCCCAAATTGACTGTCAAGAAATTGGCAAATTGGCAGATTCGAGATTTTTTGCCAATGGTAAAGAATCTGATAGTGGTGTTTGCTCAAACCGAAATGTAGCTGCTGAGGCTACCAATGTAGCTTCATCACAGGAGTCGCCAAATAACAACCAAGTTAACCCAGCTCCTCCAGACAGGGTGAATGATGTTTTCTGGGAACAGTTTCTTACCGAAAGGCCAGGCTGTTCTGACAATGAAGAAGCAATATCCAACTACCGAGCAAACCCATGTGATGAACAAGACGAAGGGCGGTCAGTTCATGGAATCTCTAGAAACATTAAGAACATGGATCAACTAACACTTTGA 510 0.4294 MDSCLSRRATTAESSKLHSLEPSSEEGDSHISCQLNLTLASCPLQVNRNSYSARSPQIDCQEIGKLADSRFFANGKESDSGVCSNRNVAAEATNVASSQESPNNNQVNPAPPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPCDEQDEGRSVHGISRNIKNMDQLTL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2388 169 MobiDBLite consensus disorder prediction 93 113 - -
Ssu5g2388 169 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 1 165 - -
Ssu5g2388 169 MobiDBLite consensus disorder prediction 93 111 - -
Ssu5g2388 169 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 165 IPR027725 -
Ssu5g2388 169 MobiDBLite consensus disorder prediction 1 28 - -
Ssu5g2388 169 MobiDBLite consensus disorder prediction 1 18 - -
Ssu5g2388 169 MobiDBLite consensus disorder prediction 143 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2388 Ssu-Chr5 66780074 66780583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2388 7 169 HSF AT4G13980 43.976 1.49e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2388 K09419 - gmx:100786408 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2388 5 66780074 66780583 Ssu5g2388 5 66780074 66780583 ECH