LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g2387	ATGGACGGAGCGCCGCCATCAGCCGCCGCCGGAGCCGGAGGTCCGGCGCCGTTCCTTCTGAAGACCTACGACATGGTGCACGATTCCTCCACGAAAGACATCGTTTCGTGGAGCCCTACCAACAACAGCTTCGTCGTTTGGAACCCGCCCGAGTTCGCGCGCCTTCTTCTCCCGACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAATACCTATGGATTTCGAAAAATACATCCAGAGCGATGGGAATTTGctaatgatgattttgtgaaaGATCAAAAGCATCTTCTTAAGAATATACATCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCAGGATCTCTTGTAGATCCAGAAAGGGCAGGATTTGAGGAAGAAATAGAGAAACTTTCCCGTGAGAAAACTTCTCTTGAATCCGATATTTATAGCTTCAAACAACATCAGTCAACAGCAAAGCTTCGGCTAGAAGATTTTCTGCAGCGATTAGATGGTGTTGAGAAGAGGCAGAAACAATTGCTGAACTTCTTTGAGAAGGCTCTTCAGAATCCTTCTTTTGTTGAACATCTTTCACGCAAAATTGAGTCCATGGATTTATTGGCATATAGTAAGAAAAGGCGATTGCCTCAGGTTGATCATGTGCAACCAGTTGCCGAAAGTAGCTTTGTGGACAGTCATAGCAATTTTAGAATGGAATTTGGAAATGTTTTCCATCAAGATTTCTCGAATAAACTCAGACTTGAATTGTCACCAGCTGTTTCAGATATGAACTTAGTATCACGTAGCACAGAGAGTTCAAATGAAGATGGGGAAAGCCCACAGAAAAAGCTGTCTGAAGTAGAACCAAAAGGAGTGCAGACAAGAACAGCTACTTACATTTGCACCTGA	900	0.4378	MDGAPPSAAAGAGGPAPFLLKTYDMVHDSSTKDIVSWSPTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDDFVKDQKHLLKNIHRRKPIHSHSHPPGSLVDPERAGFEEEIEKLSREKTSLESDIYSFKQHQSTAKLRLEDFLQRLDGVEKRQKQLLNFFEKALQNPSFVEHLSRKIESMDLLAYSKKRRLPQVDHVQPVAESSFVDSHSNFRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTESSNEDGESPQKKLSEVEPKGVQTRTATYICT	299

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g2387	299	PRINTS	Heat shock factor (HSF) domain signature	69	81	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g2387	299	PRINTS	Heat shock factor (HSF) domain signature	56	68	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g2387	299	PRINTS	Heat shock factor (HSF) domain signature	18	41	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g2387	299	Gene3D	-	13	108	IPR036388	-
	Ssu5g2387	299	SMART	hsfneu3	14	107	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g2387	299	MobiDBLite	consensus disorder prediction	272	286	-	-
	Ssu5g2387	299	MobiDBLite	consensus disorder prediction	262	299	-	-
	Ssu5g2387	299	SUPERFAMILY	"Winged helix" DNA-binding domain	14	107	IPR036390	-
	Ssu5g2387	299	Pfam	HSF-type DNA-binding	18	107	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g2387	299	ProSitePatterns	HSF-type DNA-binding domain signature.	57	81	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Ssu5g2387	299	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-5	11	295	-	-
	Ssu5g2387	299	Coils	Coil	125	145	-	-
	Ssu5g2387	299	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	11	295	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g2387	Ssu-Chr5	66775961	66780027	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g2387	18	292	HSF	AT4G13980	62.681	4.21e-122	356

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Ssu5g2387		HSF_DNA-bind	9.8e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g2387	K09419		-	gmx:100816484	537.724