Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2374 ATGGGCCTTTCGAGTTTGAAGAACGTTTCGCTGGACAACAACGAGCTTCAGGGGCCTTTGCCGGTGTTTGGGAAAGGTGTGAAGGTTACTCTCGATGGGATCAATAGCTTTTGTCTCAACACTCCCGGGAATTGCGATTCCAGGGTGATGGTTTTGCTTCAGATTGCTCAGGCGTTTGGGTATCCCATTCGGTTGGCGAGTTCGTGGCAGGGGAATGACCCTTGTAATGGTTGGAGCTTTGTGGTGTGTTCTGCGGGGAAGATTATTACTGTGAATTTCGCGAAGCAGGGTTTGCAGGGTACCATCTCCCCTGCGTTTGCCAATTTGACTGATTTGAGGAACTTGTATCTCAGTGGGAATAATTTGACCGGTTCTATACCTGAGAGTTTGACCACTTTGTCTCAGCTTCAGAATCTTGATGTGTCTGACAACAACCTCTCTGGAGAGGTTCCCAACTTCCCGCCCAAAGTGAAGTTGGTGACTGCGGGTAATGCTTTGCTTGGGAAAGCTCCTAGTCCTGGAAGTGGAGGAGCAAGTGGAACTACTCCTTCTTCAGGGTCTGCTTCTGGTGGAAGTGCTGGGGAATCTGCAAATGGTACCTCTTTGCTGTCGCCGGGTTGGATTGTTAGTATAGTTGTTATTGTTCTGTTTTTTATTGCAGTGGTGTTGTTTGTGTCTTGGAAGTGTTATGCCAAAAAGCGGCAGCTGAAATTCAGGAGGGTTAATGGTCGTGAAAATGGAGAAGGAAGCTTTAAACTTGGTGGTGTTCCCAGCGAGCTGCAAAGCGAGAGCAGTGGTGATCGCAGTGACCTTCATGCTTTTGAAGGTGGGAATGCGACGATTTCGATCCAAGTTCTTCGACAAGTGACGAATAATTTCAGCGAGGATAACATTTTAGGCAGGGGAGGGTTTGGAGTAGTTTATAAGGGGGAGTTGCATGACGGAACGAAAATGGCTGTCAAGAGGATGGAATCTGTTGCAATGGGAGACAAAGGAATGAAGGAGTTCCAAGCAGAGATTGCAGTTCTTAGTAAAGTTAGGCATAGACATTTGGTTGCTCTTTTAGGGTATTGCATCAATGGCAATGAAAGGCTTTTGGTTTATGAATATATGCCTCAAGGTACATTAACACAGCACCTGTTTGAATGGCGTGAACATGGGTATGCTCCTTTGACTTGGAAACAAAGGGTAGCAATAGCTTTGGATGTGGCACGGGGGGTGGAATACTTACACAGCTTAGCTCAGCAAAGCTTCATTCATAGAGACTTAAAACCCTCAAACATTCTACTAGGTGATGACACGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGCACCAGATGGGAAGTATTCTGTTGAGACACGGTTGGCTGGAACATTTGGATACCTTGCACCTGAGTATGCAGCTACTGGAAGAGTGACAACGAAAGTGGATGTTTATGCATTTGGAGTAGTTTTGATGGAACTTATCACTGGTAGAAAGGCATTGGATGATACTGTGCCAGATGAAAGGTCTCACTTGGTTACATGGTTCCGTAGGGTACTAATTAACAAGGAAAACATTCCAAAGGCAATTGATCAAATTCTCAATCCCGATGAGGAAACCATGAAGAGCATATATAAAGTGGCTGAGCTGGCAGGCCATTGCACTGCTCGTGAACCATACCAAAGGCCAGATATGGGTCATGCAGTGAATGTCTTGGTTCCTCTTGTGGAGCAATGGAAACCTACTAGCCACGAAGAAGAGGACAGCTCTGGCGTGGACCTTCAGATGAGCCTTCCTCACGCTCTACGAAGGTGGCAAGCCAATGAAGGCACTTCCTCAACATTTAATGACATGTCCTTCTCACAAACCCAATCAAGCATCCCCTCTAAACCTGCAGGATTTGCAGACTCCTTTGATTCTATTGATTGCCGGTAA 1926 0.4605 MGLSSLKNVSLDNNELQGPLPVFGKGVKVTLDGINSFCLNTPGNCDSRVMVLLQIAQAFGYPIRLASSWQGNDPCNGWSFVVCSAGKIITVNFAKQGLQGTISPAFANLTDLRNLYLSGNNLTGSIPESLTTLSQLQNLDVSDNNLSGEVPNFPPKVKLVTAGNALLGKAPSPGSGGASGTTPSSGSASGGSAGESANGTSLLSPGWIVSIVVIVLFFIAVVLFVSWKCYAKKRQLKFRRVNGRENGEGSFKLGGVPSELQSESSGDRSDLHAFEGGNATISIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKMAVKRMESVAMGDKGMKEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFEWREHGYAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDTRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDDTVPDERSHLVTWFRRVLINKENIPKAIDQILNPDEETMKSIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEEEDSSGVDLQMSLPHALRRWQANEGTSSTFNDMSFSQTQSSIPSKPAGFADSFDSIDCR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2374 641 MobiDBLite consensus disorder prediction 175 195 - -
Ssu5g2374 641 MobiDBLite consensus disorder prediction 610 628 - -
Ssu5g2374 641 MobiDBLite consensus disorder prediction 250 269 - -
Ssu5g2374 641 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 1 641 - -
Ssu5g2374 641 MobiDBLite consensus disorder prediction 610 641 - -
Ssu5g2374 641 Gene3D Phosphorylase Kinase; domain 1 257 370 - -
Ssu5g2374 641 SMART serkin_6 293 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2374 641 MobiDBLite consensus disorder prediction 171 195 - -
Ssu5g2374 641 CDD STKc_IRAK 299 572 - -
Ssu5g2374 641 ProSiteProfiles Protein kinase domain profile. 293 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g2374 641 SUPERFAMILY L domain-like 47 153 - -
Ssu5g2374 641 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Ssu5g2374 641 SUPERFAMILY Protein kinase-like (PK-like) 272 578 IPR011009 -
Ssu5g2374 641 PANTHER OSJNBA0070M12.3 PROTEIN 1 641 - -
Ssu5g2374 641 Gene3D Ribonuclease Inhibitor 47 170 IPR032675 -
Ssu5g2374 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Ssu5g2374 641 Gene3D Transferase(Phosphotransferase) domain 1 371 594 - -
Ssu5g2374 641 Pfam Leucine rich repeat 105 146 IPR001611 GO:0005515
Ssu5g2374 641 Pfam Protein tyrosine and serine/threonine kinase 296 566 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2374 Ssu-Chr5 66615673 66618344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2374 104 569 Receptor kinase-like Gene Family AT4G02010 37.705 1.37e-78 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Ssu5g2374 PK_Tyr_Ser-Thr 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2374 - - gmx:100286794 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2374 5 66615673 66618344 Ssu5g2374 5 66615673 66618344 ECH