Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2362 ATGCAATCCCTCAAGTTACGCCCTGcccttttattctctctttccAATCACTTCTCTTCTAACTCTGTCAGatcctttttctcttcattctccGCCGCTTCTTTCTCAACCCAATGCCCACACTCGAACGAAAGCACTTCCATAATTGATTACCTAAATGCCAACTTCCAATTCTCGAGAACCCAATCCTTCTATATCTCAAAACGTGTTTCACGGGGCAGATTCCCTCAAAGGCCCTTGTCTGTGCTCagttttttcaaacaaattggGTTTTGTGATGCCCAGATTCTGTCCGTGGTTCGTCAGAGACCCCAGATACTGTTTGCAGAtgttgacaaaatcttgagaccCAAAATTGAGCTCTTTCGGCTGTTTGGTTTCGAGGGTTCGGAGTTAAGCAAGTTCATTTCCAAGAATTCGTCCATTTTGACTTCTAGTTTAAAGAAAACTTTGGTCCCCGCTGTGGAAGCTATTAGGAAAATTGTGTGCCATGAGAAAGATTTTCTTCGTGTGCTGCACAGATGTGGCTGGATACTCCCAAAGTACCAAAAGTTTATGGACAATGTTGCCTTCTTGCAGAGTTGTGGCGTTGTTGGGTCTCATCTTGCAATGCTACTCAAACTACAGCCAAGGCTTTTCATTGCACAGCACTCTACTATTGGAAACTGTGTTTCGCGTGCTGTAGACATGGGTTTCCATGAAAATTCAAGAATGCTTGTCCATGGAATCCATACAATAAGTAGTTTGAGCCATAAAACATTTAGGAGAAAGCTGGAGCTAATGAATTGTTTTGGTTTTTCCGAGGATGAGGGCCTGCAAATGTTCAGAAGAGCCCCAACTTTGCTTAGAACATCAGAGAAGAAGTTGAAGGTCGGAATGGAATTCTTCTTGCAAACAGTTATGCTGCCCAAGTCAGCCCTGGTCCATCAGCCAAGGATTTTGATGTATAGCATGGAGGATCGCGTGCTTCCTCGATATAGAGTCTTCCAGctcttaatatcaaaaaatcttTGCAGCAAGAAGGCCTCCAGTTATGTTTATGTGTTATGCTTGTCTGAGGAGATGTTCTTGGTCAAGTATATATCACAGTTCAGAGAAATTGCAGAGGAGTTATTAGTCGTATACAAGGGTCGTTATCTGGAAGCATAA 1149 0.3977 MQSLKLRPALLFSLSNHFSSNSVRSFFSSFSAASFSTQCPHSNESTSIIDYLNANFQFSRTQSFYISKRVSRGRFPQRPLSVLSFFKQIGFCDAQILSVVRQRPQILFADVDKILRPKIELFRLFGFEGSELSKFISKNSSILTSSLKKTLVPAVEAIRKIVCHEKDFLRVLHRCGWILPKYQKFMDNVAFLQSCGVVGSHLAMLLKLQPRLFIAQHSTIGNCVSRAVDMGFHENSRMLVHGIHTISSLSHKTFRRKLELMNCFGFSEDEGLQMFRRAPTLLRTSEKKLKVGMEFFLQTVMLPKSALVHQPRILMYSMEDRVLPRYRVFQLLISKNLCSKKASSYVYVLCLSEEMFLVKYISQFREIAEELLVVYKGRYLEA 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2362 382 PANTHER EMB|CAB62602.1 28 377 - -
Ssu5g2362 382 PANTHER CGI-12 PROTEIN-RELATED 28 377 IPR003690 GO:0003690|GO:0006355
Ssu5g2362 382 Gene3D Transcription termination factor 3, mitochondrial 184 367 IPR038538 -
Ssu5g2362 382 Gene3D Transcription termination factor 3, mitochondrial 57 183 IPR038538 -
Ssu5g2362 382 Pfam mTERF 248 356 IPR003690 GO:0003690|GO:0006355
Ssu5g2362 382 Pfam mTERF 151 260 IPR003690 GO:0003690|GO:0006355
Ssu5g2362 382 Pfam mTERF 83 167 IPR003690 GO:0003690|GO:0006355
Ssu5g2362 382 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Ssu5g2362 382 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Ssu5g2362 382 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Ssu5g2362 382 SMART mt_12 203 233 IPR003690 GO:0003690|GO:0006355
Ssu5g2362 382 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2362 Ssu-Chr5 66391390 66392538 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu5g2362 mTERF 5.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2362 K15032 - vvi:100268158 323.168