Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2358 ATGGACGAGGATTTTGAGTTCCCAAGTGCTGGCAACATGGAAATGCCTGAGGAGGAAATGGAGAGCCCGATCCTCAAGGTTGGGGAGGAGAAGGAGATTGGGAAGAAGGGGCTGAAGAAGAAACTGCTCAAGGAAGGTGAAGGCTGGGATACCCCGAATACCGGTGACCAAGTTGAAGTGCATTATACCGGAACCTTGCTTGATGGAACCCAATTTGATTCTAGCCGTGACAGGGGTACCCCTTTCAAGTTCAAGCTTGGCCAAGGGCAAGTGATCAAGGGATGGGATGAGGGTATCAAAACCATGAAAAAAGGTGAGAATGCCCTTTTCACAATACCCCCAGAATTGGCTTATGGAGAGTCTGGGTCTCCTCCCACTATTCCCCCCAATGCAACTCTGCAGTTTGATGTGGAGTTGCTGTCTTGGACAAGTGTGAAGGACATATGCAAGGATGGAGGAATTTTGAAGAACATAATTACTGAAGGGGAGAAATGGGATAATCCTAAGGACCTGGATGAAGTGTTTGTTAAGTATGAAGCTCGGCTTGAAGACGGGACAGTCATTTCAAAATCTGATGGGGTGGAGTTCACTGTGGAAAAGGGGTATTTCTGTCCTGCTTTGGCTAAGGCtgtgaaaacaatgaaaaacGGAGAGAAAGTTCTCTTGAATGTGAAGCCACAATATGCATTTGGTGAGAGTGGAAGGCCAGCATCAGGAGATGAAGGTGCCATACCTCCAAATGCTTCGCTTCAAGTGGATCTTGAGTTGGTCTCATGGAAGACCGTGTCTGACATTACCAAGGACAGGAAGGTTCTCAAGAAGACTTTGAAGGAAGGAGAGGGATATGAACGACCAAATGATGGAGCTGTAGTTCAAGTGAAACTGATTGGCAAGCTGCAAGATGGAACTGTCTTCATCAAGAAGGGCCACGATGATGAACAGCCATTCGAGTTCAAAATTGATGAAGAGCAAGTAATTGATGGACTTGACAAAGCTGTGAAGAACATGAAGAAAGGGGAAATTGCATCGCTAATCATACAGCCCGAATATGCTTTTGGTCCATCTGGATCTCCTCAGGAATTGGCTAATGTTCCTCTTAATTCCACCGTTTACTATGAAGTTGAGCTGCTTTCCTTTGTAAAAGAAAAGGAATCATGGGATCTGAATACACAAGAGAAGATTGAGGCAGCtgggaagaaaaaggaagaagggaaTGCTTTATTTAAGGTTGGCAAATATGAAAGAGCGTCTAAGAGATATGAAAAGGCCATAAGGTTTATTGAGTATGATTCCTCCTTCAGTGATGAGGAGAAACAGCAAACTAAGGCATTGAAAATCACATGCAATCTCAACAATGCAGCCTGTAAGTTGAAGCTAAAAGACTACAAACAGGCAGAGAAGATGTGCACAAAGGTGTTGGAGCTTGATAGTAGGAATGTAAAAGCACTGTATCGGAGGGCGCAAGCATATATTTATCTTGTGGACTTGGATCTAGCCGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAGACAATAGGGATGTGAAGATTGAGTACAAAATGTTGAAGGAGAAAGTGAGAGAATATAACAAGAAGGACGCACAGTTCTACGGTAGCATATTTGCGAAAATGAATAAACTAGAACAAGCAAGAACAGCAGCAGTACAACAGGAGCCTGTGCCAATGTCTATTGACAGTAAAGCTTAA 1710 0.4292 MDEDFEFPSAGNMEMPEEEMESPILKVGEEKEIGKKGLKKKLLKEGEGWDTPNTGDQVEVHYTGTLLDGTQFDSSRDRGTPFKFKLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGILKNIITEGEKWDNPKDLDEVFVKYEARLEDGTVISKSDGVEFTVEKGYFCPALAKAVKTMKNGEKVLLNVKPQYAFGESGRPASGDEGAIPPNASLQVDLELVSWKTVSDITKDRKVLKKTLKEGEGYERPNDGAVVQVKLIGKLQDGTVFIKKGHDDEQPFEFKIDEEQVIDGLDKAVKNMKKGEIASLIIQPEYAFGPSGSPQELANVPLNSTVYYEVELLSFVKEKESWDLNTQEKIEAAGKKKEEGNALFKVGKYERASKRYEKAIRFIEYDSSFSDEEKQQTKALKITCNLNNAACKLKLKDYKQAEKMCTKVLELDSRNVKALYRRAQAYIYLVDLDLAEMDIKKALEIEPDNRDVKIEYKMLKEKVREYNKKDAQFYGSIFAKMNKLEQARTAAVQQEPVPMSIDSKA 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2358 569 SUPERFAMILY FKBP-like 14 148 - -
Ssu5g2358 569 ProSiteProfiles TPR repeat profile. 480 513 IPR019734 GO:0005515
Ssu5g2358 569 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 171 260 IPR001179 GO:0003755
Ssu5g2358 569 SUPERFAMILY FKBP-like 263 397 - -
Ssu5g2358 569 SMART tpr_5 480 513 IPR019734 GO:0005515
Ssu5g2358 569 SMART tpr_5 446 479 IPR019734 GO:0005515
Ssu5g2358 569 SMART tpr_5 397 430 IPR019734 GO:0005515
Ssu5g2358 569 PANTHER PEPTIDYLPROLYL ISOMERASE 269 379 - -
Ssu5g2358 569 SUPERFAMILY TPR-like 386 546 IPR011990 GO:0005515
Ssu5g2358 569 Gene3D - 30 146 IPR046357 GO:0003755
Ssu5g2358 569 Gene3D - 147 260 IPR046357 GO:0003755
Ssu5g2358 569 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 55 143 IPR001179 GO:0003755
Ssu5g2358 569 Coils Coil 513 533 - -
Ssu5g2358 569 PANTHER PEPTIDYLPROLYL ISOMERASE 380 550 - -
Ssu5g2358 569 PANTHER PEPTIDYLPROLYL ISOMERASE 1 267 - -
Ssu5g2358 569 Gene3D Tetratricopeptide repeat domain 383 540 IPR011990 GO:0005515
Ssu5g2358 569 Gene3D - 261 382 IPR046357 GO:0003755
Ssu5g2358 569 SUPERFAMILY FKBP-like 147 263 - -
Ssu5g2358 569 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 380 550 - -
Ssu5g2358 569 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 267 - -
Ssu5g2358 569 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 140 IPR001179 GO:0003755
Ssu5g2358 569 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 282 377 IPR001179 GO:0003755
Ssu5g2358 569 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 168 257 IPR001179 GO:0003755
Ssu5g2358 569 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 288 380 IPR001179 GO:0003755
Ssu5g2358 569 Pfam Tetratricopeptide repeat 481 513 IPR019734 GO:0005515
Ssu5g2358 569 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 269 379 - -
Ssu5g2358 569 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2358 Ssu-Chr5 66362891 66365960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2358 22 569 Calmodulin-binding Proteins AT5G48570 75.862 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2358 K09571 - gmx:100810243 1020.76