Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2348 ATGTGCTGCCTCAAGAACCTCTGGTCTCAATTCAAAACTAAGGAAACTAAACTATGCGAGTGTGACCACATCAACATCGAGGATACAAAGAGTGCAGAAAGGGGCACCAATTTAGATGCAGAGCAGGACGCTGAAGCCAATAGTTCTTTCACTCATGCTGTCATCAATATGGTCGGGATTCTCATAGGTCTGGGGCAGTTATCAACTCCATATGCTTTAGAGCAAGGAGGGTGGGCATCTGCATTTTTGCTTATAGGACTGGGTGTGATGTGTGCTTATAGTTCTCATTTACTTGGGAAATACCTAGAAAAGAACTCCAAGTTAAAAAGTTACGTGGACATTGGGGATCACGCATTTGGGGCAAAAGGAAGATTTTTAGCTACAACTTTCATCTACATGGAGATCTTCATGGCCCTTGTTTCCTATACCATCTCATTGCATGACAACTTGGCCACCGTGTTCTTGGGGACGCATCTGAAGCTGCAATTGGAAAGATTATCTACATCACAGCTCCTGACCATTGGTGCAGTGTTGATTGCTCTGCCTAGTTTGTGGCTCAGGGATCTCTCTTCCATATCTTTCCTTTCAACTGGTGGTATTCTCATGTCCCTTGTCATTTTTGTGTCAGTAATATCCACTGCAATTTTTGGTGGTGTCCAAGTTAATCATAAGATACCCCTCCTCCATCTTCACAACATTCCCTCTATTTTTGGCCTTTACATCTTCAGCTATGGAGGACACATTGTTTTCCCTAATTTATATAATGCCATGAAAGACCCCTCAAAGTTTACCAAGGTTTCTATAGTGAGCTTCACATTAGTTACATCACTTTATACGACCTTGGGTTTCATGGGTGCCAAGATGTTTGGTCCTGATGTCAATTCTCAGGTAACTCTCAGCATGCCTCCAAAGCTTTTTGTAACAAAGGTTGCTCTGTGGGCAACCGTGGTGACGCCTATGACCAAATATGCGCTTGAATTTGCACCATTTGCTACTCAGCTGGAGCAAAGGCTTCCCAGCTCCACCAGTGGTAGgacaaaaatgataattagGAGCAGTGTGGGTTCATTTTTGCTTTTGGTTATACTAGTCCTTGCTCTTTCAGTACCATATTTTGAACATGTACTTAGCCTCACTGGTTCCTTAGTAAGTGTTgcaatttgtttgattttcccATGTGCTTTCTACATAAAGATTTGTTGGGGTCAAATATCAAAGCCTCTCTTAGTCCTAAACCTCTCTATTATCACATTTGGGTTTCTTCTTGGAGTGATGGGCACCATTTCCTCCTCAAAATTGCTAGTGAAACATTTTCAAACCAACTCAATCTGA 1332 0.4129 MCCLKNLWSQFKTKETKLCECDHINIEDTKSAERGTNLDAEQDAEANSSFTHAVINMVGILIGLGQLSTPYALEQGGWASAFLLIGLGVMCAYSSHLLGKYLEKNSKLKSYVDIGDHAFGAKGRFLATTFIYMEIFMALVSYTISLHDNLATVFLGTHLKLQLERLSTSQLLTIGAVLIALPSLWLRDLSSISFLSTGGILMSLVIFVSVISTAIFGGVQVNHKIPLLHLHNIPSIFGLYIFSYGGHIVFPNLYNAMKDPSKFTKVSIVSFTLVTSLYTTLGFMGAKMFGPDVNSQVTLSMPPKLFVTKVALWATVVTPMTKYALEFAPFATQLEQRLPSSTSGRTKMIIRSSVGSFLLLVILVLALSVPYFEHVLSLTGSLVSVAICLIFPCAFYIKICWGQISKPLLVLNLSIITFGFLLGVMGTISSSKLLVKHFQTNSI 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2348 443 PANTHER AMINO ACID TRANSPORTER AVT1H 35 439 - -
Ssu5g2348 443 Pfam Transmembrane amino acid transporter protein 47 428 IPR013057 -
Ssu5g2348 443 PANTHER OS05G0424000 PROTEIN-RELATED 35 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2348 Ssu-Chr5 66226381 66230161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2348 14 437 Amino Acid or Auxin Permease AAAP Family AT5G16740 60.656 1.70e-169 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2348 - - gmx:100787423 734.176