Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2347 ATGGAAATAGTTCGTCCTCAGAGTCGCAGGAACTTCTTGTCCTCCTCCAACGACGTCGTTTCTGTTCCCACCATTCCCCTTTATCGCTCTGCTCCGGCACTCGAGGTCAGGCTCGAGGATTTCGAGTCCTTCGCCATCGACCGCCTCCGAGTTCTCAAGGGGATTTCTGATGGTTTGTCACGGGGAAAAAAACCggaagaaatggaaattttgGTAAAGGACCTGTGGAAAGTGAATATGAGACATCAACACGCATCTGAGGTTTTGAACAAGGATATTATATCTCATTTTGTTCTACGTCTGGTGTATTGCAGAACGGAGGACTTGAGGAAATGGTTTCTTTCTATGGAATCTGCACTCTTTCGCTACCGTTTTCGTCTTCTGAATGCTGAAGCTCAGAGGGCAGTCTTGGATGAATTTGACCTTTCTTACAAGGCTGTTAGCAATGTGGAATTTGAGAGCATAAAAGAGAAGTTGGGACAAGTTGCACGTTCTATGGGTCAGCCTTCACCCACTGCTGACACTATCTTCTACAAGGTACCATTTGAAGAAGTTCCAGAGCTTGTTGCTGGACGAAAAGTGTTTATAAATCAAGGATATGCATATGTTGCAATGAATCAGGTTGTTTCACTTGTAGCCACACTATTCCGCAGTCAGCTGTCAAAGACACTCATCCTTACAAACAGAAAATGGACATCTTCAATTAGAGAACAAGAGAGACATAGGTTGACTCCTATTGTGGAAGCCCTGTGCTCAAGTTATCTGGGTCCTGATTATTCTCAGTCAAGAGAATATGCTGATATATCATTAAAAGACATTGATCAAGTTGCTAAGAGCTCATTTCCTTTGTGCATGCGTCACCTCTTTGATAAGCTGAGAGAGGATCATCATTTAAAGCATGGAGGGAGGATGCAACTAGGCCTCTTTCTCAAGGGTGTTGGCTTGAATCTGGATGATGCACTTGCGTTTTGGAGGGCAGAGTTCTCTAAAAAGGTTGGTTTGGAGAAGTTTGAGAAACAATATGCTTACAACATACGCCATAATTATGGAAAAGAGGGGAAGAGAACTGATTATACTCCCTATTCTTGTCAAAAGATTATTTCATCAACTCCTGGAGCTGGAGATCAGCATGGTTGCCCCTATCGACATTTCAGTGAAGAGAATCTAAGAGCTGCTCTCAGTAGAATGGGGGTAAACAGTCGAGCAATGGAAGACGTGATAGACAAAGTGAGAAATCGACATTATCAGTTGGCTTGCACCTTGACATTTGAAGCTCTTCATGGCATGCCGTGTGATGCAGGGATTAACCATCCAAATCAATACTTCAGTGACAGTCAAAAGATATTACAGTCAAAGaAGGATTCTTCAGTCTAG 1374 0.4265 MEIVRPQSRRNFLSSSNDVVSVPTIPLYRSAPALEVRLEDFESFAIDRLRVLKGISDGLSRGKKPEEMEILVKDLWKVNMRHQHASEVLNKDIISHFVLRLVYCRTEDLRKWFLSMESALFRYRFRLLNAEAQRAVLDEFDLSYKAVSNVEFESIKEKLGQVARSMGQPSPTADTIFYKVPFEEVPELVAGRKVFINQGYAYVAMNQVVSLVATLFRSQLSKTLILTNRKWTSSIREQERHRLTPIVEALCSSYLGPDYSQSREYADISLKDIDQVAKSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLNLDDALAFWRAEFSKKVGLEKFEKQYAYNIRHNYGKEGKRTDYTPYSCQKIISSTPGAGDQHGCPYRHFSEENLRAALSRMGVNSRAMEDVIDKVRNRHYQLACTLTFEALHGMPCDAGINHPNQYFSDSQKILQSKKDSSV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2347 457 PANTHER DNA PRIMASE LARGE SUBUNIT 1 454 - -
Ssu5g2347 457 Pfam Eukaryotic and archaeal DNA primase, large subunit 177 442 IPR007238 GO:0006269
Ssu5g2347 457 PANTHER DNA PRIMASE LARGE SUBUNIT 1 454 IPR007238 GO:0006269
Ssu5g2347 457 PIRSF DNA_primase_large 2 457 IPR016558 -
Ssu5g2347 457 Gene3D - 5 250 - -
Ssu5g2347 457 CDD PriL_PriS_Eukaryotic 27 445 IPR016558 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2347 1 456 Core DNA Replication Machinery Family AT1G67320 67.683 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2347 K02685 - gmx:100806321 858.211