Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2346 atggGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTCGCTAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCACCTGAGGCTAATGTGTCTACACGGGAAGCCTTGGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTCGAGTCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAACGTAAgGAACACTTGCTGAGTGAGGCTAACAGGTCTCTAAGACAAAGGCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGATCAATCCCGGTGTTGAAGACATGGGATATGGCAGGCATCCAGCTCAAACTCAGGCTGACGCCCTCTTTCAACCATTGGAGTGTGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGCGGTGACAGCAGGCCCAAGCATGAGCAATTACATGGCAGGATGGTTACCATAG 732 0.474 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQRQLEGYQINPLQLINPGVEDMGYGRHPAQTQADALFQPLECEPTLQIGYQPDPVSAVTAGPSMSNYMAGWLP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2346 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu5g2346 243 ProSiteProfiles K-box domain profile. 89 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu5g2346 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu5g2346 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu5g2346 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu5g2346 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu5g2346 243 Coils Coil 126 146 - -
Ssu5g2346 243 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Ssu5g2346 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Ssu5g2346 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu5g2346 243 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Ssu5g2346 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu5g2346 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 230 - -
Ssu5g2346 243 Coils Coil 152 172 - -
Ssu5g2346 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 230 - -
Ssu5g2346 243 Pfam K-box region 91 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2346 Ssu-Chr5 66153423 66161464 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2346 1 243 MADS-box Gene Family AT1G24260 75.000 2.18e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu5g2346 K-box 2.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2346 - - gmx:100805078 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2346 5 66153423 66161464 Ssu9g1833 9 55712779 55719939 PCT