Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2345 atggggaagaagaaggtgGAGATGAAGCGAATCGAGAACAAAAGCACTCGCCAGATAACATTCTCGAAGAGGCGCAGTGGATTGATGAAGAAAGCTCGCGAGTTGTCCATTCTCTGCGATGCGAAGGTGGCGCTCGTCGTCTTCTCCAGCACCGGGAAGCTCTTCGAGCTCTGCAACGGTGACAGTTTGGCCAAGGTCCTGCAGCGATATTGGGATCATTTAGGAGCGAACGGTACTGACACAAAGGAACTTCGTTTTGAAATTGGAGATATCTGGTCTGGTGTAGCATTTCCTCAGTTTGTGAAAAGGCACTTTGGTGTTTCTGAACTTGATCAACTGAGTGTGACTGACCTTATGGAACTAGAGAAACTGATTCATACTGCACTTTCGCAAATCAGATCAACAAAGATGCGATTATTGATGGAATCTGTAGTGAATCTTAAGAAAAAGGAACATAtcttgagaaaagaaaatgagctttTGGAGAAACAgcTGTGGACGTGGTTTTAG 510 0.4137 MGKKKVEMKRIENKSTRQITFSKRRSGLMKKARELSILCDAKVALVVFSSTGKLFELCNGDSLAKVLQRYWDHLGANGTDTKELRFEIGDIWSGVAFPQFVKRHFGVSELDQLSVTDLMELEKLIHTALSQIRSTKMRLLMESVVNLKKKEHILRKENELLEKQLWTWF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2345 169 PANTHER MADS-BOX PROTEIN FLOWERING LOCUS C 1 164 - -
Ssu5g2345 169 PANTHER MADS BOX PROTEIN 1 164 - -
Ssu5g2345 169 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Ssu5g2345 169 Coils Coil 144 164 - -
Ssu5g2345 169 Pfam K-box region 99 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu5g2345 169 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Ssu5g2345 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu5g2345 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu5g2345 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu5g2345 169 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu5g2345 169 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Ssu5g2345 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu5g2345 169 ProSiteProfiles K-box domain profile. 81 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu5g2345 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2345 Ssu-Chr5 66132987 66151434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2345 1 165 MADS-box Gene Family AT5G65060 41.818 1.23e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu5g2345 K-box 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2345 K09264 - gmx:100804540 271.937