Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2340 ATGACACCTGGATACGAATACGATATTAATGATCTGCATCAAGAGGCTCAAGCAAGATGGTTGAAGCCTGCAGAGGTGATGTACATTTTACAGAATCATGAAAAGTTCCAGTTCACCCAAGAGCCTCCGCAACAGCCAACCAGTGGATCCTTGTTTCTGTTTAACAAAAGAGTCCTGCGTTTCTTCCGTAAAGATGGTCATAACTGGCGCAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACACGAACGGCTGAAGGTTGGAAATGTTGAAGCCTTAAATTGTTACTATGCACACGGAGAGCAGAACCCTATTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGCATATGAGCATATTGTTCTTGTGCATTATAGAGACACAAGCGAGGGAAGGCTTAGTTCCATAGCTGGTGCACAATTGTCACCTGGTTCCTCTTCTGTGTTTAATCAGAGTCCTAGCCCTTATTCTACTCAGAATCCAGGGTCAACATCCATACTTGGTGATTCATATGAACCTAATCAGAGTTTCTCCAGTTCTGGATCTGCAGAAGTTACCTCTGATATATACATTCAGAGCAATAAAATGGGTCACATGGATGGAACAGATGCAGACTCAGGAACCTCAACTGAACTCGAGGTTACTCAAGCTTTGCGCCGATTGGAGGAGCAGTTAAGTTTGAATGAGGACAACTTTAAAGAAATTGCTCCCTTCTGCAATAAGCATGAAACTGCAGATGATTCAAACCCTCAGCACGATCAAGGGATGATCAGAAATCAAGAGCAATCTGCAGCTTTCTCTGGACCAGATGATCAAGGGCTATTTTATGATGGATATAATGGAAGGCAAGGTGATAGTGGTGAATGTTATCATGAATTAATAGACCATGGGTACCCTGATGCCAATGAAAAGGCTTTATGGACAGGGGTGCTGGAATCATGTAACTCCTCATCTACAGTCAAGTTACCACAGAAAAATGTATACATCCCAACTGGAAATGAAAATTCTCTATCTTCAAGAATGGTACCAGTTTCCAACCAGGAAAGCAGTCACTGGCTAAACTTCAACAGTAATAATGCTGAAAACTCTGTTTTCTCGCTACATCAAGGTGTTGATGGAGTCAAATTTCCTGCATATTCTTCAATGGTGGAAACACAAGAAATTAATTCTGACTACTATGGAACATATTTTGACCAAAGCCGAATTGGAGCACCTCCGGATGCAGATTCAAGCTTGACTATTGCACAAAAACAGAAATTTACTATTAAGGCAGTCTCCCCTGAATGGGGTTATGCCACTGAGACTACCAAGGTCATCATTGTTGGGTCTTTTCTCTGTCATCCCTCGGATTCTGCTTGGGCTTGTATGCTCGGTGATGTTGAAGTTTCTGCTGAGATAATTCAGGATGGTGTAATCTGTTGTGAAGCTCCATCTCACCTTCCTGGAAAGGTTACTCTCTGCATTACTTCTGGAAACCGGGAGTCCTGCAGTGAAGTCAGAGAGTTTGAATATCGTAATAAGACCAATAGTTGCACCCAATGTGCTCAATTGGAAACAGAAGCCACTAGAAGTCCAGAAGAGCTGTTATTACTTGTTAGATTAGGGCAGATGCTTCTTTCTGAGTCAACAATAAAGAATGACAACATAGAATCTGGTGTTCCTCTCATAAAACAAAAAGCTGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTAGTTGGCAGTGGAACATCTACCGGTACTACTGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTGCAACAGTGGCTTTCTTGCAGATCTCAGGAAAAAGATGAAGAGACAGGCTGTTCTTTGTCCAAGAAAGAGCAGGGGATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGAGTGAATATAAATTTCCGTGACATCAATGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGAGCATCTGCTGGAGCTGTGACAGATCCAAGTGCACAAGATCCAATTGGTAAAACTGCTGCATCTTTAGCAGTCAGCAGTGGCCACAAGGGACTGGCAGGGTATCTTTCAGAGGTAGCTGTAACAAGCCATCTGTCATGGCTTACTCTGGAAGAGACAGAGCTTTCTAAAAGTTCTGCTGAGCTTCAGGCAGATATGACTGTTAGCAGTGTCTCCAAGGAAAATCTTGCTGCCAGTGAGGATCAGGCGTCACTCAAAGATACCTTGGCTGCTATCAGAAATGTAACTCAGGCAGCCGCGCGGATACAATCTGCTTTTCGCTCACATTCTTTCAGAAAACGGAGAGCAAAAGAAGCAGCTGCTAGTGCGGGCGACATTGGTAGTATTCCAGAGATTTCTGCTATGTCAAAACTTGCCTTTCGGAACTCGTGCGCATATAATTCAGCTGCTTTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCTTAGCGTTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGCTATCAGGTTAGGAAGCATTACAAGGTAATATGGGCAGTTGGAATCTTGGACAAGGTTGTGTTACGATGGAGGAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGAAcattaatgaaaatgaagatgaagataTTCTGAAGGTGTTCCGAAAACAGAAAGTGGATGTAGAAATTGAAGAGGCTGTTTCACGGGTGCTGTCCATGGTCAACTCACCGGATGCTCGTGAGCAATATCATCGCATGCTTGAGAAATATCGTCAAGCTAAGGCTGAACTTGCGGGTACGAGTGACGAAGCATCATTATCAACTTCTGTAGGGGAAGCCTTATTTATGGAAGATGCCTTATTTATGGAAgatgatttttttcaatttccctAG 2952 0.4285 MTPGYEYDINDLHQEAQARWLKPAEVMYILQNHEKFQFTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPIFQRRSYWMLDPAYEHIVLVHYRDTSEGRLSSIAGAQLSPGSSSVFNQSPSPYSTQNPGSTSILGDSYEPNQSFSSSGSAEVTSDIYIQSNKMGHMDGTDADSGTSTELEVTQALRRLEEQLSLNEDNFKEIAPFCNKHETADDSNPQHDQGMIRNQEQSAAFSGPDDQGLFYDGYNGRQGDSGECYHELIDHGYPDANEKALWTGVLESCNSSSTVKLPQKNVYIPTGNENSLSSRMVPVSNQESSHWLNFNSNNAENSVFSLHQGVDGVKFPAYSSMVETQEINSDYYGTYFDQSRIGAPPDADSSLTIAQKQKFTIKAVSPEWGYATETTKVIIVGSFLCHPSDSAWACMLGDVEVSAEIIQDGVICCEAPSHLPGKVTLCITSGNRESCSEVREFEYRNKTNSCTQCAQLETEATRSPEELLLLVRLGQMLLSESTIKNDNIESGVPLIKQKADDDSWSHIIEALLVGSGTSTGTTDWLLEELLKDKLQQWLSCRSQEKDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPIGKTAASLAVSSGHKGLAGYLSEVAVTSHLSWLTLEETELSKSSAELQADMTVSSVSKENLAASEDQASLKDTLAAIRNVTQAAARIQSAFRSHSFRKRRAKEAAASAGDIGSIPEISAMSKLAFRNSCAYNSAALSIQKKYRGWKGRKDFLALRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMNINENEDEDILKVFRKQKVDVEIEEAVSRVLSMVNSPDAREQYHRMLEKYRQAKAELAGTSDEASLSTSVGEALFMEDALFMEDDFFQFP 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2340 983 Gene3D - 820 868 - -
Ssu5g2340 983 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 982 - -
Ssu5g2340 983 Pfam IPT/TIG domain 422 505 IPR002909 -
Ssu5g2340 983 SUPERFAMILY E set domains 422 506 IPR014756 -
Ssu5g2340 983 ProSiteProfiles IQ motif profile. 770 798 IPR000048 GO:0005515
Ssu5g2340 983 ProSiteProfiles Ankyrin repeat region circular profile. 651 677 - -
Ssu5g2340 983 SMART CG_1_2 12 130 IPR005559 GO:0003677
Ssu5g2340 983 ProSiteProfiles IQ motif profile. 843 868 IPR000048 GO:0005515
Ssu5g2340 983 Pfam IQ calmodulin-binding motif 822 840 IPR000048 GO:0005515
Ssu5g2340 983 Pfam IQ calmodulin-binding motif 845 864 IPR000048 GO:0005515
Ssu5g2340 983 Coils Coil 936 956 - -
Ssu5g2340 983 ProSiteProfiles IQ motif profile. 820 849 IPR000048 GO:0005515
Ssu5g2340 983 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Ssu5g2340 983 SUPERFAMILY Ankyrin repeat 620 713 IPR036770 -
Ssu5g2340 983 MobiDBLite consensus disorder prediction 145 185 - -
Ssu5g2340 983 CDD IPT 422 506 - -
Ssu5g2340 983 SMART iq_5 819 841 IPR000048 GO:0005515
Ssu5g2340 983 SMART iq_5 842 864 IPR000048 GO:0005515
Ssu5g2340 983 SMART iq_5 768 790 IPR000048 GO:0005515
Ssu5g2340 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 811 866 IPR027417 -
Ssu5g2340 983 ProSiteProfiles Ankyrin repeat profile. 651 683 IPR002110 GO:0005515
Ssu5g2340 983 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Ssu5g2340 983 Pfam Ankyrin repeats (3 copies) 633 711 IPR002110 GO:0005515
Ssu5g2340 983 Gene3D - 534 716 IPR036770 -
Ssu5g2340 983 SMART ANK_2a 690 719 IPR002110 GO:0005515
Ssu5g2340 983 SMART ANK_2a 651 680 IPR002110 GO:0005515
Ssu5g2340 983 PANTHER CALMODULIN-BINDING PROTEIN 1 982 - -
Ssu5g2340 983 Gene3D Immunoglobulins 416 511 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2340 Ssu-Chr5 66040843 66049329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2340 5 983 CAMTA Transcription Factor Family AT1G67310 53.107 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Ssu5g2340 CG-1 9.7e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2340 K21596 - gmx:100786880 1685.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1830 9 55667558 55679759 Ssu5g2340 5 66040843 66049329 PCT